- Probe CUST_13185_PI390587928
- Source Contig U35_38534
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13185_PI390587928 | Hv_44K_v2 | GCACATGGTGGCATTGTTTATTTGATTTGATGCACATGTTGTGTCATGTTTTGTAATTTG | 44 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.259 | 1.259 | 1.178 | 0.950 | 0.350 | 0.309 |
| Raw | 971.546 | 1578.741 | 1262.036 | 1606.865 | 205.097 | 199.849 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_5511.3 | 1658 | 2e-24 | 1582 - 1641 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_5511.1 | 2123 | 2e-24 | 1996 - 2055 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_3546.1 | 2142 | 8e-25 | 1995 - 2054 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38534 | 397 | 3e-25 | 45 - 104 | 100 | 60 / 60 | minus |
Contig Sequence (397 bp)
>U35_38534 397 Hv_44K_v2 TTTTTTTTTTTTTTTTTGTTGCCACATCAACTCTTATAACAATACAAATTACAAAACATG ACACAACATGTGCATCAAATCAAATAAACAATGCCACCATGTGCACGAACTGAACCCTTA ACAAACTAAAGCACAAGCCAGGACACTGAGGGATTCAGACACATAGCACTGAGAGATTGT GTCCAACCTCCAACATCACCGGCCCAATGCCAATAGTGTACCGATTACAAAATCTGGATT TAGGTCTCCCTCAAGTATACCACAACCCACACAGCAGGCAGTGGCACCATTTTATCACAA ACATGCATTCTCAGTAGGAAGCTAGGATCGTCATCTCTTAACAAAGAAGTGCTCCAGATT AGACTGCCCACCTTTGCCTCCTCCAGCCTTCTGCTGT
Homology of Contig U35_38534 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |