- Probe CUST_13184_PI390587928
- Source Contig U35_38535
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13184_PI390587928 | Hv_44K_v2 | CGGATATTTTGACTCCAGCACTGTGGCCTAAGGCACAGCAGAAGGCTGGAGGAGGCAAAG | 155 | GeneList: turquoise MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.141 | 1.359 | 1.345 | 1.141 | 0.509 | 0.283 |
Raw | 64.666 | 125.608 | 105.569 | 145.584 | 21.414 | 13.259 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_38535 | 228 | 3e-25 | 156 - 215 | 100 | 60 / 60 | plus |
Contig Sequence (228 bp)
>U35_38535 228 Hv_44K_v2 CCGGTGATTTTGCAAGAAAGGCATTGGCAAATGGTCCAAGGGCGTGACAGCACCTGGTTA TCTAGGCGCAAACACAAACAAGGGCAATCTGATTGCTGTGGGGCCTGACGGGCGCGGGGG TAAGGTAAAAGTCCTGAGAGGTCATGGCCGGTTCCCGGATATTTTGACTCCAGCACTGTG GCCTAAGGCACAGCAGAAGGCTGGAGGAGGCAAAGGTGGGCAGTCTAA
Homology of Contig U35_38535 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |