- Probe CUST_13184_PI390587928
- Source Contig U35_38535
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13184_PI390587928 | Hv_44K_v2 | CGGATATTTTGACTCCAGCACTGTGGCCTAAGGCACAGCAGAAGGCTGGAGGAGGCAAAG | 155 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.141 | 1.359 | 1.345 | 1.141 | 0.509 | 0.283 |
| Raw | 64.666 | 125.608 | 105.569 | 145.584 | 21.414 | 13.259 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_38535 | 228 | 3e-25 | 156 - 215 | 100 | 60 / 60 | plus |
Contig Sequence (228 bp)
>U35_38535 228 Hv_44K_v2 CCGGTGATTTTGCAAGAAAGGCATTGGCAAATGGTCCAAGGGCGTGACAGCACCTGGTTA TCTAGGCGCAAACACAAACAAGGGCAATCTGATTGCTGTGGGGCCTGACGGGCGCGGGGG TAAGGTAAAAGTCCTGAGAGGTCATGGCCGGTTCCCGGATATTTTGACTCCAGCACTGTG GCCTAAGGCACAGCAGAAGGCTGGAGGAGGCAAAGGTGGGCAGTCTAA
Homology of Contig U35_38535 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |