barSeed - Barley Seed Development Database

Probe CUST_13183_PI390587928

Source Contig U35_38536

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13183_PI390587928	Hv_44K_v2	AGATAAGTCTGTTCCCAGTCCTGCCCTTCGAGGATCTGGCGAACTTTTATCTTTTTAACG	401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55848.1	1699	7e-23	1503 - 1562	98	59 / 60	plus	ABC01534 ABC01536 ABC09567 ABC49628
JLOC1	JLOC1_36063.1	2080	4e-23	1471 - 1530	98	59 / 60	plus
Harvest21	ABC01536	1792	1e-23	1326 - 1385	98	59 / 60	plus	ABC01536
Harvest21	ABC01535	579	1e-23	258 - 317	98	59 / 60	plus
Harvest21	ABC49628	320	6e-22	190 - 249	97	58 / 60	minus	ABC49628
Harvest35	U35_38536	709	3e-25	402 - 461	100	60 / 60	plus
Harvest35	U35_14437	1755	1e-23	1328 - 1387	98	59 / 60	plus

Contig Sequence (709 bp)

>U35_38536 709 Hv_44K_v2
GAGCCGCCGAGCCTGGGAAGAGCCACCACCCCAGCCTATCGCCCCGCCTCCGCTTCCGAA
GGGTCAGTGATGGCGGACCGTGCTAACCACCCGTCTGTCATGCAGAAGTTCGGTGGGCAG
TTCCACCTCAGCTCCAGCTTCTCTGAGGGTGTACGAGCTCGCAACATCTGCCCTTCTGTG
CCATCCTATGAGAGGCGCTTCACCACAAGCAGCTACATGACTCAGAGCCTTGGCATCAGA
GCCCCAATGATGTCATCTTCTCCACTGTTTGCTGGTGCTAACATCCTCCGTGCCATTGCT
GGTGCTGGTGTGCTCTCCGGCTACGATCAGCTCCAGATCCTCTTCTTCGGCAAGAAGTAT
GGCTCAGGCGGTGCCTAGAGGGGAAGAAATGATGACGAACAAGATAAGTCTGTTCCCAGT
CCTGCCCTTCGAGGATCTGGCGAACTTTTATCTTTTTAACGTTGGAAGGCAATAATTTCT
GTAGAGGGTGGATTTTCCCAACATTCGTTTTTGGTGGAGGCATCGAACTCCAGAGGTTGT
CGTAGGTTGGCGGCAGCGTTCTCAAAACATTTACTATCATAGGGTTGAGTTTGAGTTCGA
GTATGTGCCCTGAATCGTTACTGGGCAATTTTCCTTAAATACATTGTCCTCGAATCCGAC
TGAGATTATGGTCAAGTTTATCCTGTTGGTGTTAAAAAAAAAAAAAAAG

Homology of Contig U35_38536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None