barSeed - Barley Seed Development Database

Probe CUST_13182_PI390587928

Source Contig U35_38537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13182_PI390587928	Hv_44K_v2	GAGGTCAAGCGCAAGATGCGCGATGAGTTTGATCGGTTCCTGCCTGAGTATGGGCTCACT	626	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.304	1.139	1.762	1.278	0.296	0.512
Raw	38.708	55.093	72.699	84.301	5.409	12.763

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59510.1	1767	2e-24	1099 - 1158	100	60 / 60	minus	ABC25221
JLOC1	JLOC1_38730.1	1750	8e-25	1081 - 1140	100	60 / 60	minus
Harvest35	U35_38537	686	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_38537 686 Hv_44K_v2
ACCTCCGTGTCTCGGAGGAGGACGAGGACTCTGACGCCTCCGACTCCGATTCTGATGCCG
AGGGAGGGAGAAGGAAGAGGCGGCGGCTCTCGGACGATGGGGAGGAGGCGGACGGCGACC
CGGAGAGGCTGTTCGGCAAGCTGCGGAGGGAGTACTACCGCCTCGGCACCTTCCACGGGA
AGCCTTCGGGGTGCCTCATGTACGAGCTCGCCCACGCGCTCCGCAGGAACACCAACGAGC
TCCTCTGGCTCGCCTGCGTCTCCCTCACTGACCAGTTCGTCCACGAGCGCATCACCAACG
AGCGCTACCAGGCTGCCGTCATGGAGCTCGAGCAGCACATCAATGGATCAGGCAACCTCG
ACCCGTCCGGCCTCGGGTCGGTGGTGACGCTCAAGGATGGAACCAAGATCCGGGCGCCGG
AGGCCTCCCGCATCGCCTATGAGGACGAGCCAAGGCTGATGCTGCTGCGGGAGTGGAGTT
TGTTCGACTCCATGCTCTGCTCCTCATATGTCGCGACCAAGCTCAAGACCTGGAGCGACA
ACGGGCTGAAGAAGCTGAAGCTGCTCCTAGCGAGGATGGGGTTCCCGCTCGCCGACTGCC
AGAAGAGGTTCCAGTACATGAGCATGGAGGTCAAGCGCAAGATGCGCGATGAGTTTGATC
GGTTCCTGCCTGAGTATGGGCTCACT

Homology of Contig U35_38537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g03130.1	605	1e-140	protein\|CDC45A - Putative DNA replication initiation protein, expressed
Brachypodium v1_2	Bradi4g43950.1	604	5e-141
Arabidopsis v10	AT3G25100.1	596	1e-104	\| Symbols: CDC45 \| cell division cycle 45 \| chr3:9144292-9146082 FORWARD LENGTH=596