barSeed - Barley Seed Development Database

Probe CUST_13180_PI390587928

Source Contig U35_38539

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13180_PI390587928	Hv_44K_v2	TTTTGTGAGGCAGTCAAACTTCAAATTGCCCGCTGATCCTACAGTGCCTATTATAATGGT	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366243	2447	2e-24	1678 - 1737	100	60 / 60	plus	ABC05574 ABC45371 ABC45603 ABC47595
MLOC	MLOC_68056.1	2269	2e-24	709 - 768	100	60 / 60	minus	ABC04653 ABC05574 ABC45371
MLOC	MLOC_68056.2	2140	2e-24	664 - 723	100	60 / 60	minus	ABC04653 ABC05574 ABC45371
JLOC1	JLOC1_44991.1	2295	8e-25	1420 - 1479	100	60 / 60	plus
Harvest21	ABC05574	2169	3e-25	1374 - 1433	100	60 / 60	plus	ABC05574
Harvest35	U35_38539	782	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_16183	2257	3e-25	1374 - 1433	100	60 / 60	plus

Contig Sequence (782 bp)

>U35_38539 782 Hv_44K_v2
GCAGGAACTAGCCTCACATATGAGACTGGAGATCATGTTGGTGTGTACGCAGAAAATTCA
ACCGAGACTGTAGAGGAGGCAGAAAAGCTATTAGATTATTCGCCAGATACTTATTTCTCA
ATTTATGCTGACCAAGAGGATGGCACTCCACTTTTTGGGGGCTCTTTGCCACCTCCTTTC
CCTCCCTGTACCGTGAGGGTTGCACTTGCCAGATATGCCGATCTGTTGAATTCACCTAAG
ACATCTAGCATCCCCTGCTGGAAAGAAAGAATATTCTCAGTGGATAATCGCTAGTCAAAG
AAGTCTCTTGGAAGTTATTTCGGAGTTTCCATCAGCGAAACCTCCGCTTGGTGTCTTCTT
TGCAGCTATTGCTCCTCGCCTTCAGCCGAGATACTACTCAATATCTTCCTCACCAAGAAT
GGCACCAACAAGAATTCATGTAACATGTTCACTAGTTCATGGGCAAAGCCCCACTGGAAG
GATCCATAAAGGAGTTTGTTCCACTTGGATGAAGAATTCAACTCCATCGGAAGAGAGCGA
AGAATGTAGCTGGGCTCCAATTTTTGTGAGGCAGTCAAACTTCAAATTGCCCGCTGATCC
TACAGTGCCTATTATAATGGTAGGCCCTGGGACTGGCCTTGCACCTTTCAGGGGCTTCTT
ACAGGAAAGATTAGCTNTAAAAGAGACTGGTGTGGAACTGGGCCGTGCCATCCTGTTCTT
CGGGTGCAGAAACCGCCAGATGGACTTCATATACGAGGACGAGCTGAACAACTTTACCGA
AT

Homology of Contig U35_38539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38620.1	715	2e-121	protein\|NADPH reductase, putative, expressed
Brachypodium v1_2	Bradi4g37770.1	698	2e-124
Arabidopsis v10	AT4G24520.1	692	4e-106	\| Symbols: ATR1, AR1 \| P450 reductase 1 \| chr4:12663065-12667066 REVERSE LENGTH=692