barSeed - Barley Seed Development Database

Probe CUST_13179_PI390587928

Source Contig U35_14580

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13179_PI390587928	Hv_44K_v2	GTGGAAGAGGAACTCAAGAAGTGAAATTGAGAGACCTGTGCCTGTTTAATATCATAAAAT	732	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.765	1.494	1.219	0.925	0.399	0.490
Raw	5288.700	6950.577	4971.137	5799.173	906.137	1210.735

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23562.1	984	8e-25	805 - 864	100	60 / 60	plus
Harvest21	ABC02291	2556	3e-25	49 - 108	100	60 / 60	minus	ABC02291
Harvest35	U35_14580	840	3e-25	733 - 792	100	60 / 60	plus

Contig Sequence (840 bp)

>U35_14580 840 Hv_44K_v2
GCACGAGGCTCCTCTCGCCGCAGCCTCCATCGAAGCCGAGAGAGGAGCAGGGCGAAAGGA
GGCCGTCGGAGATGTCGGAGAAGAAGCGCGCCCCCGGCCCTCGCAAGGACGAGGTGGTGA
CCCGCGAGTACACCGTCAACCTCCACAAGCGCCTCCACGGATGTACCTTCAAGAAGAAGG
CACCAAATGCCATCAAGGAGATCAGGAAGTTTGCCCAGAAGGCCATGGGAACAAATGATG
TCCGCATCGACGTTAAGCTCAACAAGCACATCTGGAGCAGCGGCATCAGGAGTGTCCCGA
GGAGAGTCCGTGTCAGGATTGCCCGCAAGAGGAACGACGAGGAGGACGCTAAGGAGGAGC
TGTACTCTCTGGTGACAGTTGCTGAAGTCCCCCAGGAAGGTCTTAAAGGTTTGGGTACCA
AGGTTGTGGAGGATGAGGACTAAACCCTCTGTCTGTTGTTTCAATCAGTTAGAACTTAAT
ACATATCTGCTGAGAGCATATTGGGAAGTCTTGCTTTAGCTTATTGTTATCTACTGTTCA
TGATGTTCCATGACTTCTTGATAGAAGATTTGAGACGTTGGATATTTTGTTCAAGTGCTT
GAAGTTTTGACTTGCTGTAAAAAAAAAAAAAAAATGGGCGTTCTTCACATCCTTGTGATG
CTCGATTGTCGTCTCTGTCAAGAATTCCTTGCTAGGAACTAAATAGCTTTTGTTTATTGG
AGGATTCTTGATGTGGAAGAGGAACTCAAGAAGTGAAATTGAGAGACCTGTGCCTGTTTA
ATATCATAAAATTAATGGAACATGTTTAGGATTTGGCAATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14580 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g21480.1	125	4e-61	protein\|60S ribosomal protein L31, putative, expressed
Brachypodium v1_2	Bradi3g53460.1	124	4e-68
Arabidopsis v10	AT5G56710.1	119	1e-51	Ribosomal protein L31e family protein \| chr5:22944003-22944767 REVERSE LENGTH=119