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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_13168_PI390587928Hv_44K_v2TAATCAGCTATATGCTATGCAATATGGTACAGTTCCTGTTGTTCATGGAACTGGGGGCCT1615GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1070.2651.3272.4011.0831.163
Raw 73.058280.1681226.7503521.083553.591643.565



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_70501.219182e-241513 - 157210060 / 60plus ABC01808
MLOCMLOC_70501.121212e-241346 - 140510060 / 60plus ABC01808 ABC33098
JLOC1JLOC1_46788.122298e-251425 - 148410060 / 60plus
Harvest21ABC0180823623e-251616 - 167510060 / 60plusABC01808
Harvest35U35_1458923623e-251616 - 167510060 / 60plus



Contig Sequence (2362 bp)

>U35_14589 2362 Hv_44K_v2
TGGCGGCGACGGGCGTCGGCGCCGGGTGCCTGGCCCCCAGCGTGCGCCTGCGCGCCGATC
CGGCGGCGCGGGCGACCGCCTGCGTCGTCCGCGCGCGGCTCCGGCGCGTGGCGCGGGGCC
GCTACGTCGCCGAGCTCAGCAGGGAGGGCCCGGCGGCGCGCCCCGCGCAGCAGCTGGCCC
CGCCCGTCGTGCCAGGCTTCCTCGCGCCGCCGCCGCCCGCGCCCGCACAGTCGCCGGCCC
CGACGCAGCCGCCCCTGCCGGACGCCGGCGTGGGGGAACTTGCCCCCGACCTCCTGCTCG
AAGGGATTGCTGAGGATTCCATCGACACCATAGTTGTGGCTGCAAGTGAGCAGGATTCTG
AGATCATGGATGCCAACGACCAACCTCTAGCTAAAGTTACACGTAGCATCGTGTTTGTGA
CTGGTGAAGCTGCTCCTTATGCAAAGTCAGGGGGGCTGGGAGATGTTTGTGGTTCGTTGC
CAATTGCTCTTGCTGCTCGTGGTCACCGTGTGATGGTTGTAATGCCGAGATACTTAAATG
GGACCTCTGATAAAAACTATGCAAAGGCATTATACACCGGGAAGCACATTAAGATTCCAT
GCTTCGGGGGATCACATGAAGTCACCTTTTTTCATGAGTATAGAGACAACGTCGATTGGG
TGTTTGTTGATCATCCATCATATCATAGACCAGGAAGTTTGTATGGAGATAATTTTGGTG
CTTTTGGTGATAATCAGTTCAGATACACACTACTTTGCTATGCTGCTTGTGAGGCCCCAC
TAATCCTTGAATTGGGAGGATATATTTATGGACAGAGTTGCATGTTTGTTGTGAACGATT
GGCATGCCAGCCTTGTGCCAGTCCTTCTTGCTGCAAAGTATAGACCATATGGAGTTTACA
GAGATTCTCGCAGCACTCTTGTTATACATAATTTAGCACATCAGGGTGTGGAGCCTGCAA
GTACATATCCTGATCTGGGATTGCCACCTGAATGGTATGGAGCTTTAGAATGGGTATTTC
CAGAATGGGCAAGAAGGCATGCCCTTGACAAGGGTGAGGCGGTTAACTTTTTGAAAGGTG
CAGTTGTGACAGCAGATCGAATTGTGACCGTCAGTCAGGGTTATTCATGGGAGGTCACAA
CTGCTGAAGGTGGACAGGGCCTCAATGAGCTCTTAAGCTCCCGAAAAAGTGTCTTGAATG
GAATTGTAAATGGAATTGACATTAATGATTGGAACCCCACCACGGACAAGTGTCTCCCTC
ATCATTATTCTGTCGACGACCTCTCTGGAAAGGCCAAATGTAAAGCTGAATTGCAGAGGG
AGCTGGGTTTACCTGTAAGGGAGGATGTTCCACTGATTGGCTTTATTGGAAGACTGGATT
ACCAGAAAGGCATTGATCTCATTAAAATGGCCATTCCAGATCTCATGAGGGAAGACGTAC
AGTTTGTCATGCTTGGATCGGGGGATCCAGTTTTTGAAGGCTGGATGAGATCTACCGAGT
CGAGCTACAAGGATAAATTCCGTGGATGGGTTGGATTTAGTGTTCCAGTTTCCCACAGAA
TAACTGCAGGTTGCGATATATTGTTAATGCCATCCAGATTTGAACCTTGCGGTCTTAATC
AGCTATATGCTATGCAATATGGTACAGTTCCTGTTGTTCATGGAACTGGGGGCCTTCGAG
ACACGGTGGAGACCTTCAACCCTTTTGGTGCAAAAGGAGAGGAGGGTACAGGGTGGGCGT
TCTCACCACTAACCGTGGAAAAAATGTTGTGGGCATTGCGAACCGCGATTTCGACGTTTA
GGGAGCACAAGCCCTCCTGGGAGGGGCTCATGAAGCGAGGCATGACGAAAGACCATACGT
GGGACCATGCCGCCGAGCAGTACGAGCAGATCTTCGAGTGGGCCTTCGTGGACCAACCCT
ACGTCATGTAGACTGGGACTGGGGAGGTCGAAGCGCCAGTCTCCTTGAGCTCTGAAGACA
TGTTCCTCATCCTTCCGCGGCCCGGAAGGAGGATACCCCTGTACATTGCGTTGTCCTGCT
ACAGTAGAGTCGCAATGCGCTTGCTTGCTTGGTTCGCCGGTTCGAGAGTAGACGACAGTC
GCAGCGCTGCCGCGGCAGCTTCGGGTGGATGACAGTTACAGTTTTGGGGAATAAGGAAGG
GAGGTGCTGCAGGATGGTTGACAGCAAAGCACCACTCAGTCGGCAGCCTCTCTCGGTGGG
TGTTACAGCTGAAATCAGAAACCAACTGGTGTCTCTTTAGCCTTAGCGATGATGAAGTTT
GTTGCCTTCTGTGTATGTTATCTTGTCCTTAGCTGATGATAATTTTTTGATCTGTTGGAG
GATCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_14589 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g06560.16420.0protein|starch synthase, putative, expressed
Brachypodium v1_2Bradi1g48610.16570.0
Arabidopsis v10AT5G24300.16520.0| Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652