barSeed - Barley Seed Development Database

Probe CUST_13154_PI390587928

Source Contig U35_26568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13154_PI390587928	Hv_44K_v2	AATTGATATGAACACATTGATTTCCAACACTTCCATATAGGACAGCAGGAGCACCGGAGT	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4934.1	2743	7e-23	1 - 57	100	57 / 57	plus	None
JLOC1	JLOC1_3137.1	1707	8e-25	1575 - 1634	100	60 / 60	minus
Harvest35	U35_26568	492	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_26568 492 Hv_44K_v2
CAGAAGGATATATCTCAGAGTGCTAGTAAGCTAGTCCAGTTCGTCGACACTGCCAGTAAA
CCGTACCAGGAAGCATGCCAGCGAAAAATAGACTGGCTGCAGGGTGTTCAGGGCGAGTTG
TCCGCTGTCGAGCGTAAGCTCCAAACTTTGAAAGTCGATATCCAAAATCTGCATGGATCA
TGACGACGCTTGCTTTTGTTGAGATTTTGTTCGTTTGTTTGCACCTTACACACGATCATC
AATTTTTGTTTAGTCTTGTACCGCGAGATGATGACGGTGTAGAGCAGTTGCTGTATGATA
GACGTGTATGTAATATATAGACCGTATGTATGTTGTACCTTGTAACGAAATGCCGCAAGT
TCAACGAACCAACAATTGATATGAACACATTGATTTCCAACACTTCCATATAGGACAGCA
GGAGCACCGGAGTAGGCCCGTTACAAAATCTGTAAAGCCTCCCTCATGGGCAGCTACCAG
CGGCCGCTCGAG

Homology of Contig U35_26568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None