- Probe CUST_1314_PI390587928
- Source Contig U35_30085
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1314_PI390587928 | Hv_44K_v2 | TAGCATATGCTTTGCTAAACACTTTGCTCGTGTTGTCCATGACTGTTGCAAGAAGTGCCA | 199 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.276 | 0.666 | 1.588 | 1.963 | 0.872 | 1.673 |
| Raw | 3.903 | 19.989 | 42.150 | 89.429 | 12.656 | 28.028 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC29792 | 467 | 3e-25 | 200 - 259 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30085 | 467 | 3e-25 | 200 - 259 | 100 | 60 / 60 | plus |
Contig Sequence (467 bp)
>U35_30085 467 Hv_44K_v2 CCCGATTTTGTGAGACGGCTAAGACAGATTGTCGGTGACAAGCTGCTGGTTTCTACAGTA GTGAGGCTGCAACCTAAGGTACTTGAGAGCAGTAATGCTAACCCTCCATGTCGTGTGCAT ACATTCAAAGTCTTTCTCATCATATTCAGTTGAGCCTGTTTTGTCGCGCATAAGTGATTT TGTCGTCTTCATCTGGCAGTAGCATATGCTTTGCTAAACACTTTGCTCGTGTTGTCCATG ACTGTTGCAAGAAGTGCCACCCATGGCAGGTGCTGAACTGCTACCAAGAAGAGCACCCGG CACGGGAGAGCAGCACCTCCATATGTAGCAGTTCGTTGAGATAACAGCTCGTGGATCCGC TCCTATGGAGACGGAGAGCACAAGGACATCCATTAAGTTATACAGTATGTCAGTTCGTTA TAGACAAAACCAGTCAGTAATCTGTGAGCAGCCTGTTAAGTTGGTGT
Homology of Contig U35_30085 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |