- Probe CUST_13148_PI390587928
- Source Contig U35_38545
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13148_PI390587928 | Hv_44K_v2 | CCCGACGACAACATCAATCGAGACACTTGCTGTTCGTTGAGCTTCTTTCTTCGCTCAGAG | 43 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.442 | 2.564 | 0.677 | 0.614 | 1.265 | 8.268 |
| Raw | 6.532 | 20.592 | 2.757 | 4.907 | 3.269 | 38.803 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_38545 | 451 | 3e-25 | 44 - 103 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_33203 | 715 | 8e-21 | 319 - 370 | 100 | 52 / 52 | minus |
Contig Sequence (451 bp)
>U35_38545 451 Hv_44K_v2 CTTTTTTTTTTTTTTTTGTTGTTGGTATTTTTTTTTCTTTTTTCTCTGAGCGAAGAAAGA AGCTCAACGAACAGCAAGTGTCTCGATTGATGTTGTCGTCGGGCATACTGCAGAGGCGTG CAACTCTCCGGTAATCAATGGCATCCTGCATGCATGCAGGGTCTTCACACCCACCCACTG TCGTCCTCGTTACCGATGTTGACTTGTACGGAGAGGTCAAAGTAGGGGCGGTTAGGATGG GCACGGCGTGCAGTCTCCAGAGCAGACCTCGCTTCCTCGGCCTCCTCCTTTCGAGGCAGT GAAGTGTACAATTCGACATGGACATACCGAAGGGAAGGCTGCAGGTTCCCGATGCCCGTG TCAAACAGTTCACCGCCGTTGTTGCCGTCTGCTTCCTCTTTTGGGACCGGCAGACCGGTA CGGAGCGTAACGTGTTCCGCCTTGGGCAAAG
Homology of Contig U35_38545 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |