barSeed - Barley Seed Development Database

Probe CUST_13142_PI390587928

Source Contig U35_14592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13142_PI390587928	Hv_44K_v2	AAACCAGTACGGCTATCAGACATGAGCAAGCTCAAGCCCCATATAATGAAAAGCAGATGC	517	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.632	0.289	0.265	1.263	2.105	3.827
Raw	18.389	12.316	11.225	86.740	48.924	99.321

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34262.2	1291	2e-24	206 - 265	100	60 / 60	plus	ABC05953
MLOC	MLOC_34262.1	2321	2e-24	1236 - 1295	100	60 / 60	plus	ABC05953
JLOC1	JLOC1_22074.2	2119	8e-25	1280 - 1339	100	60 / 60	plus
JLOC1	JLOC1_22074.1	1852	8e-25	1013 - 1072	100	60 / 60	plus
Harvest21	ABC05953	1071	3e-25	500 - 559	100	60 / 60	plus	ABC05953
Harvest35	U35_14592	1092	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (1092 bp)

>U35_14592 1092 Hv_44K_v2
CACGCGTCCGGGAGGAAGGAGCTCATGCCAAGCGCACACACCGCCTGCCTTTCCTCTACC
ACTCTTGCTTTCTCCTCTAGCATCCACCTCCTCCATCACACAAAACACACGCTCTCTATC
TTCTCCGATGGCGGTGGCGGCGATCGCAGAGGCTCCGTTCCATGTCTTGGCCGTGGATGA
CAGCGTCCTTGACAGGAAGCTCATCGAGAGGCTCCTCAAGACATCTTCGTTCCAAGTTAC
CACTGTGGATTCTGGGACCAAGGCTCTCCAGTTCTTGGGGCTCCATGCCGAGGACGCCTC
CATTTCCTCTGTCCATGCGGACCAGCTGGACGTCGAGGTGAACGTGAACCTCATCATCAC
TGACTACTGCATGCCTGGGATGACAGGATACGATCTGCTCAAGAAGATCAAGGAGTCGTC
GTCTTTCAGGGACATCCCGGTTGTGATCATGTCATCGGAGAACATACCTTCCAGAATTAA
CAGATGCCTGGAGGAAGGAGCAAATGAGTTCTTCCTGAAACCAGTACGGCTATCAGACAT
GAGCAAGCTCAAGCCCCATATAATGAAAAGCAGATGCAAGGAGCACTCCCACGAGGACCA
AGACCTGCTAAGCAACAGCGATACCAACCCCACAAACAACAGCAGCAGCAGAGATACCAT
CACCATTAGCAGCAGTAACCCCACGGATCACAGCAGCAGCGATACCATCAACAGCAGTAA
TCCCATGGATCACAGCAGCAGCGATACCATCAGCAGCAGTAACCCCACGGATAACAGCAG
CGGTGATAGCAGCAACATCCGCAAGAGAAAGGCGGCAGATGGCGAAATTTTACCCAAGAC
AAGCAGACCAAACCACAGTTAGCTGAAGAAAGATTATTTGACAGCCAATCTTTCCTTTCT
TGGTTCTTCATCTTACTCGGGTTTTTGACAACTGATTTGTATGTAAAACCTATGCTAGCT
CTAGTTTGCAAAAAAGAACGGAATCCGTGAACGGATACTGCTTGAATCCAATCCAATCGA
CCATGCTCGGTGTAATCAACATAGAGCTAACACGATTTTACAAACAGCTTGCTACAAAAA
AAAAAAAAAAAA

Homology of Contig U35_14592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g04500.1	202	7e-82	protein\|response regulator receiver domain containing protein, expressed
Brachypodium v1_2	Bradi4g43090.2	226	2e-91
Arabidopsis v10	AT2G41310.1	225	2e-65	\| Symbols: ATRR3, ARR8, RR3 \| response regulator 3 \| chr2:17222280-17223536 FORWARD LENGTH=225