barSeed - Barley Seed Development Database

Probe CUST_13139_PI390587928

Source Contig U35_14595

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13139_PI390587928	Hv_44K_v2	CACTCTGTATGACTACTTGCTTAATCCCAAGAAGGTATGGTCAATGAGCACTGACTTTAC	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61185.1	1233	7e-23	635 - 694	98	59 / 60	minus	ABC01879
JLOC1	JLOC1_39971.1	1112	4e-23	404 - 463	98	59 / 60	plus
Harvest21	ABC01880	537	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_14595	537	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_14595 537 Hv_44K_v2
GCAGAGGGCTCTGCTCTCTCTGCTTGAGATTAATTTCGTGATGCTGCTGGCTGCGGTTGT
GTCTATTTTATTGCGATCATCTCATAAATGATTTTAGGGATCTGCTTATTCTAGGATTGA
CCAAAGGCATGTATATTTCCTTGGTCTTCACTAATGTGCGAGGCAAGCTGACCCAAACGG
ACAGTTTTGTTACATTTCTGGTTATTTTCATGTTTTGTGATGTTGAACAGTATCTCCTGT
AAATGATTAGTTGCTGTGTTAAATAGATGGTTCGGGTTCAACCTCCATGATATCCCATCT
TCATATGTACGTATACATGAGCATTTGACAGAAGATTGTTTTTGTTGATATCAAGCACTA
TGTTGCCCTTGCAGGTCCAAACTTGCATGGTCTGTTTGGGAGGCAGTCGGGCACCACCGC
TGGTTACTCCTACTCTGCGGCAAACAAGAACAAGGCTGTGGAGTGGGAGGAGAACACTCT
GTATGACTACTTGCTTAATCCCAAGAAGGTATGGTCAATGAGCACTGACTTTACTTA

Homology of Contig U35_14595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None