barSeed - Barley Seed Development Database

Probe CUST_13138_PI390587928

Source Contig U35_14596

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13138_PI390587928	Hv_44K_v2	TTCTCTTGAAATGCATCTTGCTAACACAAACCTTGTTATTCCCATGCAGTACATTCCTGG	91	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.965	1.294	1.369	1.170	0.442	0.556
Raw	18.002	36.428	34.233	48.703	4.957	7.351

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_40266.1	1022	2e-24	761 - 820	100	60 / 60	minus	ABC01879 ABC01883 ABC36802 ABC36834
JLOC1	JLOC1_26316.1	825	8e-25	555 - 614	100	60 / 60	minus
Harvest21	ABC36834	571	3e-25	420 - 479	100	60 / 60	minus	ABC36834
Harvest21	ABC36802	485	5e-23	430 - 485	100	56 / 56	minus	ABC36802
Harvest35	U35_14596	571	3e-25	92 - 151	100	60 / 60	plus

Contig Sequence (571 bp)

>U35_14596 571 Hv_44K_v2
CTGTTATCCTGATAAATGGCTTTGCCTTGACGTATTTAGCATCAGCCTGTATGCTTGCAT
TCAGTTCTTAGCATGCCCTTTCACGTTTCTCTTCTCTTGAAATGCATCTTGCTAACACAA
ACCTTGTTATTCCCATGCAGTACATTCCTGGAACCAAGATGGTCTTCCCTGGTCTGAAGA
AGCCACAGGACCGTGCTGATCTCATTGCGTACCTGAAGAAAGCCACCTCCTCTTGAAAGG
GCATGATGCTGTGATCATGTCATTACGAGTGAATTCATTTTGCAGTAAAATAATAAGATT
AGACATTAATAGTCACTCTGGTTTAATGGGGTGGGTGATCCACGAGACAATTATCTTGCG
AATTTCGTTTTTATGATATGGGTTTCATATCTTTTAGGTTTAGTTGGTAAAATCTTCGTC
AATCTTTTGATTCAGTTGCTGGAAAATCCCAGAACGCATGTTTTGACCACCAGGTGGCGG
TGGGACTGGAATGCACACCCATGTTGATGAACATGAGATCTTTAAAATTGATATATAAAG
CTTTCTGCCTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None