barSeed - Barley Seed Development Database

Probe CUST_13134_PI390587928

Source Contig U35_14599

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13134_PI390587928	Hv_44K_v2	GGTGCCTAAATAATTGTTGGATTATCGTTATTATTGCTTGCAACAAGCCATGTGGTAATT	704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357073	968	2e-24	909 - 968	100	60 / 60	plus	ABC01883 ABC01885 ABC37654
MLOC	MLOC_14205.1	1439	2e-24	219 - 278	100	60 / 60	minus	ABC01883 ABC01885 ABC37654
JLOC1	JLOC1_9691.1	1300	8e-25	220 - 279	100	60 / 60	minus
Harvest21	ABC01885	296	3e-25	208 - 267	100	60 / 60	plus	ABC01885
Harvest21	ABC01883	781	1e-23	692 - 752	98	60 / 61	plus	ABC01883
Harvest21	ABC01884	791	6e-22	705 - 764	97	58 / 60	plus
Harvest35	U35_14599	796	3e-25	705 - 764	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_14599 796 Hv_44K_v2
GGCAGACCGCACCGCCACCGCTCCCCATCTCGATCTAAAACCGAGGGTTTCGTCCAGCTC
CGTCGCCGCGAGCCGAGCAAAGCCAACCCACCCCAGAGCCGACCCACCCCAGCCATGCCG
AAGAACAAGGGTAAGGGAGGCAAGAACCGCAAGAGGGGCAAGAACGAGGCGGACGACGAC
AAGCGCGAGCTCGTCTTCAAGGAGGACGGCCAGGAGTACGCGCAGGTGACGCGGATGCTC
GGCAACGGCCGCTGCGAGGCCATCTGCGTCGACGGCACCAAGCGCCTCTGCCACATCCGG
GGCAAGATGCACAAGAAGGTCTGGATCGCCGCCGGGGACATCGTCCTCGTCGGCCTCCGC
GACTACCAGGACGACAAGGCCGACGTCATCCTCAAGTACATGAACGACGAGGCCAGGCTG
CTCAAGGCCTACGGGGAGCTCCCCGACACGCTCCGCCTCAACGAGGGAGTCGACGTCGAC
GGACCAGAGGAGGGCGAGGGCGACAGCGACTACATCCAATTCGAGGACGAGGACATCGAC
AAGATCTAAGCTTTTTCTTCTCCTCGCCTCGCCTCGCCTCGCCTCTATACTTTCTGTTCT
ATTCTGTTCTAATAGCGTGCGCGCGTCCGTCCTTGTCTGTCTGTATCGGTCGGTGGGCTG
TTGTGGATTGATGGATTTGGTAACGAGAAATCGTTGTGATTTGGGGTGCCTAAATAATTG
TTGGATTATCGTTATTATTGCTTGCAACAAGCCATGTGGTAATTATTATCTTGTTCAAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_14599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g23440.1	145	1e-72	protein\|eukaryotic translation initiation factor 1A, putative, expressed
Brachypodium v1_2	Bradi1g39720.1	145	4e-73
Arabidopsis v10	AT2G04520.1	145	4e-65	Nucleic acid-binding, OB-fold-like protein \| chr2:1574802-1575239 REVERSE LENGTH=145