barSeed - Barley Seed Development Database

Probe CUST_13129_PI390587928

Source Contig U35_40865

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13129_PI390587928	Hv_44K_v2	GGTGCAATAGCAAAGGCTCCATGTGAAGCACAAATTGAGCTGTATGATTTGCTCATTGAT	368	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363877	6637	2e-24	4321 - 4380	100	60 / 60	plus	None
MLOC	MLOC_58909.1	3323	2e-24	1286 - 1345	100	60 / 60	plus	None
MLOC	MLOC_58909.4	3011	2e-24	1162 - 1221	100	60 / 60	plus	None
MLOC	MLOC_58909.5	1845	2e-24	755 - 814	100	60 / 60	plus	None
MLOC	MLOC_58909.3	2325	2e-24	1239 - 1298	100	60 / 60	plus	None
MLOC	MLOC_58909.2	3190	2e-24	1199 - 1258	100	60 / 60	plus	None
JLOC1	JLOC1_38299.3	2937	8e-25	1143 - 1202	100	60 / 60	plus
JLOC1	JLOC1_38299.2	3329	8e-25	1143 - 1202	100	60 / 60	plus
JLOC1	JLOC1_38299.1	3066	8e-25	1154 - 1213	100	60 / 60	plus
Harvest35	U35_40865	431	3e-25	369 - 428	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_40865 431 Hv_44K_v2
ATTTTTCCAGCGGTGAGGATGATGCCTCATTCTGGAGTAGACTAATACAACCAGATCCTG
AAGATATGGGTCAGGAAACTTTAGCACCTCGTGCTGCACGGAATAAAAAGAGCTATGTTG
AAGATCACCAACTTGACAAAAATAGCAGCAGGAAAAGGCGAGCGGTTGACGCACAAGAAA
AGCCAAGAAGGCGTTCCAGCAGAACAGTCGACACAATCGTTTCGTTACCATTTATTGATG
GAGCAGTTGCTCAAGTACGGAACTGGTCATTTGGAAATATGCCTAAGAAGGATGCCTCCC
GCTTTGTTCGAGCGGTTAAAAGGTTTGGAAATCCAAGCCAAATTGGCTTAATTGTGGATG
ATGTTGGTGGTGCAATAGCAAAGGCTCCATGTGAAGCACAAATTGAGCTGTATGATTTGC
TCATTGATGGC

Homology of Contig U35_40865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46590.1	1003	1e-72	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g18910.1	1735	1e-79
Arabidopsis v10	None