barSeed - Barley Seed Development Database

Probe CUST_13117_PI390587928

Source Contig U35_38550

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13117_PI390587928	Hv_44K_v2	ATGTAACTATGTGAATCCTGTTTTGCCAATGCCAGAATGACGTTGATGTCAAATTCAAAC	498	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.282	0.439	0.891	1.440	1.448	2.075
Raw	1094.920	2754.561	4715.810	11803.397	4215.303	6648.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369957	1195	2e-24	1117 - 1176	100	60 / 60	plus	ABC09431
JLOC1	JLOC1_15262.3	1012	8e-25	874 - 933	100	60 / 60	plus
JLOC1	JLOC1_15262.2	921	8e-25	783 - 842	100	60 / 60	plus
JLOC1	JLOC1_15262.1	915	8e-25	777 - 836	100	60 / 60	plus
Harvest21	ABC09431	1183	3e-25	1106 - 1165	100	60 / 60	plus	ABC09431
Harvest35	U35_38550	558	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_17422	1244	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (558 bp)

>U35_38550 558 Hv_44K_v2
CAAGCGTCCGCTATATAACAACCGGCAACCAGAGACCGTGACAAAATAGCACCTCACCCC
ACCCCACCCCATGGACGCCGACCTCGACCTGGACGCCCTCCTCGCCACCTTCGCCGCCGA
TTCCGCAGTCTCCGAGCTCCTCGCCCCGCCTCCGCATCTCGATGCGGAGGCGGGGTCGCC
GGAGTCGGTGACCTCCCGGTCCAGCCCCGCCGGCGAGGAGGCGCTGTCGGAGATCGAGAG
GTTTCTGATGCAGGAGGAGGAGGCGGCGGGGGTGGAGCCGGTGGACGGGATCAGCGTGGA
TGAGTTCATCGACGCCCTGTTCGACGGTGCGGAGGAGGGGGGCGAGAAGGGGAACGGGAG
TGAGGCTGAGGCTGGGGGCAGCACTGATGGGGACTCTAGGAGGGGGGATGAAGAGGGGGT
GGAGGTGGTGACGCCGGAGACGGAGGTTGATGGCGATGATCCCATCAGCAAAAAGAAGAG
GAGGCACCCTCTGGGTTTATGTAACTATGTGAATCCTGTTTTGCCAATGCCAGAATGACG
TTGATGTCAAATTCAAAC

Homology of Contig U35_38550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None