barSeed - Barley Seed Development Database

Probe CUST_13115_PI390587928

Source Contig U35_38552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13115_PI390587928	Hv_44K_v2	ATCAACCTACTAGCAATAGGGGAGAAAACTTAGCATGTCGCAACAAAAGCGTCGATTCGA	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76284.1	2966	2e-24	1529 - 1588	100	60 / 60	minus	None
JLOC1	JLOC1_50875.1	4361	8e-25	1529 - 1588	100	60 / 60	minus
Harvest35	U35_38552	548	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_38552 548 Hv_44K_v2
GCCTATGGTACCAGTTCATATTTGGTTACCCGAAGCCCATGTAGAGGCACCTACGGCTGG
ATCCGTCATCTTGGCTGGAATTCTTTTAAAATTGGGAACCTACGGGTTTTTAAGATTTTC
AATACCCATGTTTCCCGAAGCGACACTTTGTTTCACTCCTTTCATTTATACTCTAAGCGC
GATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGATCTTAAGAAGATCAT
TGCCTACTCCTCAGTAGCCCATATGAATTTGGTGACTATTGGTATGTTTAGTCGGGCGGC
GGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGCAAGGCCAAAACATGTGTGCC
GGGCGTGCGACCCATCAACCTACTAGCAATAGGGGAGAAAACTTAGCATGTCGCAACAAA
AGCGTCGATTCGAGGCGTCAGCAAAATACCGCCGTCTGTTCCTAAAACAAAACCCCTTAG
CGCCCCGGGACGGGAGTGGGGGACGGCCCTACGCAGACAGCAGCAGCACCGGCTCTACGA
AGTCCGAA

Homology of Contig U35_38552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34094.1	329	7e-61	protein\|NADH-ubiquinone oxidoreductase chain 4, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	ATMG00580.1	495	9e-55	\| Symbols: NAD4 \| NADH dehydrogenase subunit 4 \| chrM:161693-169674 FORWARD LENGTH=495