barSeed - Barley Seed Development Database

Probe CUST_13114_PI390587928

Source Contig U35_38553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13114_PI390587928	Hv_44K_v2	CTGTCGTAAAAGCAGTAGCTTCCCCCGACAATATACAATACAACAGTAGCGACCATGAAT	0	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.745	1.641	1.177	0.562	0.254	0.171
Raw	2229.673	1237.743	955.927	648.887	118.565	85.318

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76284.1	2966	2e-24	159 - 218	100	60 / 60	minus	None
JLOC1	JLOC1_50875.1	4361	8e-25	159 - 218	100	60 / 60	minus
Harvest35	U35_38553	698	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (698 bp)

>U35_38553 698 Hv_44K_v2
ATTCATGGTCGCTACTGTTGTATTGTATATTGTCGGGGGAAGCTACTGCTTTTACGACAG
CTCCGCTTCCTCGTCTTGCTTCTACTTTGCTTGTTTGCGCGAAGGCTTAGAGTCCTTTTC
GCTAGGTCCAAATTCGTCAAAGCGAAAGATCTGATCCAACGGAAATCCCGCATATTGAGC
GCAGCTGATATGTGGCTACTAGGCGCGATCATCCCGCATGCCATAAAATAAATACTTCTT
TTTTTTATGGCCCGTCATATAAAGATAGAATAGATATGGATAGAGAGACATTCTATTGAT
TCGCGAAATGGCTCGTCGATCCAAATGAATCATTCTTCTGGTCTCTCTCTGCCCCCCCGC
CCCAAAACTGACCCACGACACAGCGCCCATTCGTTTCGCGCGCGGGAAGGCAACGAAGTT
CAGTTCAAAAGACCGCAGCGGAGTGGAGCAGCCGCGACACGAAGTTCCTTACCTTAGCTG
GATCTCGCTGGTGCCACCTAAACGGTAGGTATAGGCGGCGGATGTCTGACGTTTGGAGTT
GTCGTTCGTGCACCTGTCCCCAATAGAAGAATGAGTGATCCCTTCCCCTGCGGATCATGG
CCTTACCACTAGGTCCCCGATGGCCAGCGGNGGATTCGGTATAGCAGCTCACGTTCGTTT
GCGCTTCGCGTTCCCGCTGGACTGGACACGTGTTAGCT

Homology of Contig U35_38553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None