barSeed - Barley Seed Development Database

Probe CUST_1310_PI390587928

Source Contig U35_4910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1310_PI390587928	Hv_44K_v2	GCAGATAGAAGAAATCCATTATAGCAGAGTATAACACAGTACATAGTGTGTAGCTAACAA	865	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.483	4.254	1.065	0.728	0.942	0.839
Raw	18.196	54.210	10.833	10.334	2.972	3.394

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360437	2926	2e-24	2805 - 2864	100	60 / 60	plus	ABC05260 ABC11198 ABC16321
MLOC	MLOC_2167.1	1067	2e-24	24 - 83	100	60 / 60	minus	ABC11198
JLOC1	JLOC1_1305.1	1323	8e-25	1110 - 1169	100	60 / 60	plus
Harvest21	ABC11198	1067	3e-25	866 - 925	100	60 / 60	plus	ABC11198
Harvest35	U35_4910	1067	3e-25	866 - 925	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_4910 1067 Hv_44K_v2
AAAAATTGTCCGTGGCCTCGCTGGTGTTCCTGACCAAGGTCCTGTCTTGTTTGTGGGTTA
CCATGCACTGATGGGGATCGAGTTAAGCCCATTGTATGAAGAGTTTTTGAAGGAGAAAAA
CACGATTGTTCGTGGCATGGCTCATCCAATCTTGTTTGGATCAAATTATGAGACCTCGCG
CCAGGAGTTGTCTCGGTTTGATACAGTCTCTATGTATGGCGGATTACCAGTCACTCCAAT
CAATATGTACAGGCTTTTTGAGAGAAATCAATATGTTCTCCTCTATCCTGGTGGTGCTCG
GGAAGCTCTACATAGGAAGGGTGAAGAATACAAGTTGTTTTGGCCAGAACAGCCAGAATT
TGTAAGGATGGCGGCAAGGTTTGGTGTTACAGTCGTTCCATTTGGATTTGTCGGAGAAGA
TGACATTTTAGAGTTGGTTCTGGATTACAATGATCAAAAGAACATTCCGTACCTTCGTGA
GTGGATAGAGTCAATCAACAAAGACAGCCAGAGAGTGAGAGATAGCGTCAAAGGAGAGGA
AGGGAATCAGGACATGCACATACCTGCTATTATTCCCAAAGTACCCGGACGATTCTACTA
CCTTTTTGGCAAACCAATCAAAATGGATGGGATGAACAATGTTCTGAGGGATAGGGAGAG
CGCAAATGAAGTGTATTTACATATCAAATCAGAAGTCGAGAACGCAATGGCATACTTAAA
GAGGAAGAGGGAGGAAGATCCTTACAGGAGTATAGCCCAGCGTGCTGTGTACCAGGCAAC
TCAGGGTACTTCTGCTCAAGTCCCAACTTTTGAACCATGAAGACTAGGTGCAAGTATATT
CCTGTGATAGCGTGACTGCACATTGGCAGATAGAAGAAATCCATTATAGCAGAGTATAAC
ACAGTACATAGTGTGTAGCTAACAAATGTATCTGAATACTTTATGTTTTCAATGTACATG
CTACTTACTCACAGATGGTGATTGATTAACACCAAAATGTTACTGATTATTTGATACTTG
TTCACAATAAAGGGTCTCTTTTATCTCTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g26039.1	699	7e-159	protein\|expressed protein
Brachypodium v1_2	Bradi2g12850.1	697	2e-166
Arabidopsis v10	AT1G54570.1	704	1e-98	Esterase/lipase/thioesterase family protein \| chr1:20380649-20384953 REVERSE LENGTH=704