barSeed - Barley Seed Development Database

Probe CUST_13108_PI390587928

Source Contig U35_38559

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13108_PI390587928	Hv_44K_v2	AATGGTTACCACCACCGCACAGAGATGAACAAGAAGGTCTATAAGATCTGCAAGTCTGGA	557	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363611	1439	7e-23	884 - 943	98	59 / 60	plus	ABC01623
MLOC	MLOC_37798.1	1467	7e-23	428 - 487	98	59 / 60	minus	ABC01623
JLOC1	JLOC1_24517.1	1710	4e-23	926 - 985	98	59 / 60	plus
Harvest21	ABC01623	1527	1e-23	874 - 933	98	59 / 60	plus	ABC01623
Harvest35	U35_38559	680	3e-25	558 - 617	100	60 / 60	plus
Harvest35	U35_14391	1557	1e-23	907 - 966	98	59 / 60	plus
Harvest35	U35_39080	643	2e-21	581 - 639	97	58 / 60	plus

Contig Sequence (680 bp)

>U35_38559 680 Hv_44K_v2
GAGATGATTGACATCATTGGGCTCACCTAATGGAGATCCAGGTTAATGGTGGCACCATTG
CAGACAAGGTTGACTATGGCTACAAGTTCTTTGAGAAGGAAGTCCCAGTTGAAGCTCCAC
AAGAAGGAAACCTGTGAGGCTGTTACCATCATTGAGACCCCTCCTCTTGTCATTGTTGGT
CTTGTGGCATATGTGAAGACCCCTCGTGGCCTTCGCACTCTCAACTCTGTCTGGGCTCAG
CACCTTAGCGAAGATGTGAGGAGAAGGTTCTACAAGAACTGGTGCAAGAGCAAGAAGAAG
GCCTTCACAAAGTACGCCCTCAAGTATGACAGTGATGCAGGCAAGAAGGAAATCCAGTTG
CAGCTTGAGAAAATGAAGAAGTATGCTACTATTGTCCGTGTTATTGCCCATACTCAGATT
AGGAAGATGAAGGTGTTGTCACTCGCTGGGGTGTCACCCGCCTTCCCCGCAAGACCCACA
GGGGTCTCCGAAAGGTTGCCTGTATCGGTGCCTGGCATCCTGCTAGGGTGTCTTACACTG
TTGCCCGTGCTGGTCAGAATGGTTACCACCACCGCACAGAGATGAACAAGAAGGTCTATA
AGATCTGCAAGTCTGGACAGGAGTCTCACGAGGCCTGCACTGAGTTTGACAGGACTGAGA
AGGACATCACCCCCATGGGT

Homology of Contig U35_38559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07010.1	390	9e-66	protein\|ribosomal protein L3, putative, expressed
Brachypodium v1_2	Bradi4g24610.1	390	5e-67
Arabidopsis v10	AT1G43170.1	389	7e-57	\| Symbols: ARP1, emb2207, RPL3A, RP1 \| ribosomal protein 1 \| chr1:16266992-16268631 FORWARD LENGTH=389