barSeed - Barley Seed Development Database

Probe CUST_130_PI415269222

Source Contig TA50799_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_130_PI415269222	Hv_44K_v2	TTGTGTAAATACTACAGCAAATTTTTATACGGGCATTTTAGCAATGGCCACGATTTGGGG	514	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.921	3.292	1.246	0.651	0.342	0.376
Raw	58.218	108.196	34.896	28.727	3.037	5.411

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20815.1	3057	2e-24	1105 - 1164	100	60 / 60	minus	ABC19065
MLOC	MLOC_20815.3	2752	2e-24	27 - 86	100	60 / 60	minus	ABC19065
MLOC	MLOC_20815.2	3294	2e-24	1105 - 1164	100	60 / 60	minus	ABC19065
MLOC	MLOC_20815.4	2133	6e-24	1 - 59	100	59 / 59	minus	ABC19065
JLOC1	JLOC1_14428.2	2567	8e-25	2188 - 2247	100	60 / 60	plus
JLOC1	JLOC1_14428.1	2454	8e-25	2075 - 2134	100	60 / 60	plus
Harvest21	ABC19065	586	3e-25	508 - 567	100	60 / 60	plus	ABC19065
Harvest35	U35_24737	586	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (577 bp)

>TA50799_4513 577 Hv_44K_v2
CGGCACGAGGGTACTGCTTACATGACATAAAAGACATACTTGTCTGCTTCCTGGCATTCT
TGCCCACCGGATGGGGAATACTGCTGATTGCGCAACCTTGCATACCTCTTTTTCGGGTCA
CGGGGCTATGGGGATCTGTCCGAGCCCTTGCGCGGGCATACGAGGTTATCATGGGGATGC
TTCTCTTCACGCCGATTACCGTCCTGTCATGGTTCCCCTTCGTCTCCGAGTTCCAGACGC
GGATGCTGTTCAACCAGGCGTTCAGTAGAGGGCTGCAGATATCCCGGATTCTCGGTGGTC
AGAAGAAGGAACGGGCCTCCAGCACCAAAGACTAACTCAGCTCTTTTGCCCAGTTGCATG
CCATTTTCAATATGGTGCTACTTCAGAATACGTAGGTTGTGAATATTCCAGGATATAGAA
CATTTCCTGTGATTACAACTGTATACAAGTTGTGAAATAGTATATCTGCTAATTGCGATG
CAAGGAATCGTAGTCGTCGGATACTGCCATTTTCTTGTGTAAATACTACAGCAAATTTTT
ATACGGGCATTTTAGCAATGGCCACGATTTGGGGACA

Homology of Contig TA50799_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g76617.1	1854	2e-52
Arabidopsis v10	None