barSeed - Barley Seed Development Database

Probe CUST_13092_PI390587928

Source Contig U35_10006

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13092_PI390587928	Hv_44K_v2	TCGATACTTCCCAGCTGAAGCTCCTCCGTCTCGTCTCGTCTCGTCGCAGTCCATGGCCGA	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81208.3	1825	2e-24	80 - 139	100	60 / 60	plus	ABC16201
MLOC	MLOC_81208.1	2010	2e-24	1774 - 1833	100	60 / 60	minus	ABC16201
MLOC	MLOC_81208.2	1843	2e-24	1607 - 1666	100	60 / 60	minus	ABC16201
JLOC1	JLOC1_54034.2	1831	8e-25	181 - 240	100	60 / 60	plus
JLOC1	JLOC1_54034.1	1986	8e-25	78 - 137	100	60 / 60	plus
Harvest21	ABC20007	451	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_10006	451	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (451 bp)

>U35_10006 451 Hv_44K_v2
TACCAAGCTCCATGCGCTCGCTCGCTCGCTCCAAAGGCCCCAACCACATCGATACTTCCC
AGCTGAAGCTCCTCCGTCTCGTCTCGTCTCGTCGCAGTCCATGGCCGACCCGCAGGCCGG
AGCGCGAGTCCCACCGGAGCCCCAGGCGGAGACCCTGGTGGAGCCCGTGCGGGTCAACGG
CTCTGCGGCGGAGGCCACGCTCTCCAGCGCCGAGCTGGCGTGGCGCCCCACCGGCGCCGG
CCGCGACAGCGGTGGAAGGCGGAAGCTGGAGCTGGAGTCCGACGTGCTGGGGTTCCAGGT
GGAGGGCAGGGCTCTCAAACTCGCGACCTTTACGAGGGGGGACGTGACGGGCGCTGGGAG
GCCGCCGTCGCCGCCGGGCTGCGGCGGAGGTGCAGGGGACAGGAGGAGAGGGGAGGTGGC
GGTGGAAATGGAAAGCGAGGAGGCCGCGGAG

Homology of Contig U35_10006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None