barSeed - Barley Seed Development Database

Probe CUST_13091_PI390587928

Source Contig U35_13999

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13091_PI390587928	Hv_44K_v2	CTGATATGTGACTTGCTTTGCAACCTTAATTTCTGAATTAACGATAGTTTTTCCTCTGGT	669	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.598	1.244	1.038	1.008	0.495	0.430
Raw	3453.037	4363.433	3062.463	4697.630	800.078	764.711

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37788.1	1319	2e-24	1015 - 1074	100	60 / 60	minus	ABC01140 ABC01156
JLOC1	JLOC1_24508.1	492	8e-25	188 - 247	100	60 / 60	minus
Harvest21	ABC01156	748	3e-25	670 - 729	100	60 / 60	plus	ABC01156
Harvest35	U35_13999	748	3e-25	670 - 729	100	60 / 60	plus

Contig Sequence (748 bp)

>U35_13999 748 Hv_44K_v2
CCACCCCGCAGTCCAGCACACACGACCCACCTGCAAAATCCCCTCCCCCCTCCAATCTCC
CGAAGCAGCGATGGCCCCCAAGGCGGAGAAGAAGCCGGCGGCGAAGAAGCCCGCGGAGGA
GGAGCCGACCACGGAGAAGGCCGAGAAGGCCCCGGCGGCGAAGAAGCCCAAGGCCGAGAA
GCGTCTGCCGGCGGGCAAGACCGCCTCCAAGGAGGGCGGCGAGAAGAAGGGCCGGAAGAA
GGGCAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAGGTCCA
CCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACAT
CTTCGAGAAGCTCGCCGGCGAGGCCGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCAT
CACCTCCCGGGAGATCCAAACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCAAGCA
CGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCTTAGATCGCTAGTGT
CTGGCAGTGCTCGTAGTTACCTTGGTGTTTCACTCGTTTGTCTGAATTAGTGATGGATGA
AATTTGTTGGATGTATTTATGCAGTGATGCTCTTGGGAAGCTCTAATCTGGAATAGAAAT
ATGGAGCTCCTGATATGTGACTTGCTTTGCAACCTTAATTTCTGAATTAACGATAGTTTT
TCCTCTGGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05900.1	154	2e-55	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	3e-58
Arabidopsis v10	AT5G22880.1	145	3e-53	\| Symbols: H2B, HTB2 \| histone B2 \| chr5:7652130-7652567 REVERSE LENGTH=145