barSeed - Barley Seed Development Database

Probe CUST_13089_PI390587928

Source Contig U35_10008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13089_PI390587928	Hv_44K_v2	TCTAAATGGATCAGCTTCTTCCGAACAGAAATCTGAACTGCCTACTGATGACAAGCAGAC	983	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.443	1.183	1.110	0.744	0.728	0.668
Raw	275.275	183.735	169.686	166.135	59.498	62.633

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375382	2639	2e-24	1005 - 1064	100	60 / 60	plus	ABC08180
MLOC	MLOC_3630.2	2180	2e-24	1493 - 1552	100	60 / 60	minus	ABC08180
MLOC	MLOC_3630.3	1494	2e-24	1059 - 1118	100	60 / 60	minus	ABC08180
MLOC	MLOC_3630.1	2353	2e-24	1612 - 1671	100	60 / 60	minus	ABC08180
JLOC1	JLOC1_2180.1	2219	8e-25	491 - 550	100	60 / 60	plus
Harvest21	ABC20173	1095	3e-25	984 - 1043	100	60 / 60	plus
Harvest35	U35_10008	1095	3e-25	984 - 1043	100	60 / 60	plus

Contig Sequence (1095 bp)

>U35_10008 1095 Hv_44K_v2
TCTCCCCCCCCCCCCCCCTCGCCCACGACCCCCTCCTTCCCGAAACCCTAACCACCTCCA
CCGGCTAGATCCTTCCACCGTCCCCCGATTGGGGCGGGGACCGAGCCCTCCCCGCTGATG
GCGTCGGGGGGCGCGCAGATGGAGGTCGAGCGGCGGCTGCGCGACGTCGCCGCGCGCTTC
GTCTCGCTCCCGGAGTCCAACAAGGAGCTGCAGGCGTTGCTCGAGGAAGCAGAGATCTGG
TTGTCCAGGGTGGACCAGGCACCACCCGAAAGCATGCGCACTGCTCTTCAGCCCATGATG
CATGCTTTGGTCAGAGATGATCTGCTAAACCACCCTGACCCGGGGGTCAAGGTTGGTATA
GCATGTTGCCTAACTGAGGTTACCAGGGTCACCGCACCAGACCCCCCTTACGAGGATAAT
GTGATGAGGGGTGTGTTCACAGTGGTTGTGGACGCTTTTGGCAAGCTGGATGATGCCCAA
AGCCCATTGTTTGCAAAGCGAGTTTCCATGCTGGAAACCATTGCCAAGGTCAGGTCTTGC
GTCCTAATGTTGGACCTTGAGTGTGATGACTTGATCCAGGAAACATTCACACACTTTTTC
AGGATCGTAAGGCCAAAACTTCAAGAAAGTGTCGTCACCTCTATGGAAACTATAATGATG
TTTGTAATCCAGGAGAGTGAGCCTGTCCATCCAGGTCTGGCATCTTGTCTCCTTCGTAAT
CTTAAAAAGGAAAAGAAGGATTCTCTTCTAGCATCTTTTGAGCTTGCAGAGAGGATGGTA
GATCTTTGTCCTGAAAAATTAAAGCCAGCGTTTGCTGAGTTACTCCAGGGCACTCCCTTA
AATGAGTACAGCAATGTTGTTGTAAAGTTGATAGAAGGTTCTTCAGATGCTGGAAGAGAC
GACAACATTGATGCTGTTGAAAATGACATGGAACCTTCAAAGCCAGAGAAAGACGAACAA
GATGGAAGTCCTCCATACAGTACTCTAAATGGATCAGCTTCTTCCGAACAGAAATCTGAA
CTGCCTACTGATGACAAGCAGACGGCAGTTTCTGATGACAGGGGGCACCAGAAACAGTCA
CCACAGAGCCCGAAA

Homology of Contig U35_10008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42320.1	847	2e-114	protein\|AT hook motif family protein, expressed
Brachypodium v1_2	Bradi5g14790.1	787	2e-129
Arabidopsis v10	AT4G31880.1	873	4e-62	LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). \| chr4:15419435-15423939 REVERSE LENGTH=873