barSeed - Barley Seed Development Database

Probe CUST_13085_PI390587928

Source Contig U35_25972

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13085_PI390587928	Hv_44K_v2	AGGAAGATCAGATCGAGAAGAAATTCAGCAGCAGCATCAGGAAACAAGACGATGATGTCG	290	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357785	1254	2e-24	69 - 128	100	60 / 60	plus	ABC25907
MLOC	MLOC_54501.1	2818	2e-24	2342 - 2401	100	60 / 60	plus	ABC17711 ABC21718 ABC25907
JLOC1	JLOC1_35083.1	2392	8e-25	1930 - 1989	100	60 / 60	plus
Harvest21	ABC25907	632	3e-25	283 - 342	100	60 / 60	plus	ABC25907
Harvest35	U35_25972	632	3e-25	291 - 350	100	60 / 60	minus

Contig Sequence (632 bp)

>U35_25972 632 Hv_44K_v2
GCGCCCTGCCCGGAGTTGACCGCGGCGAGCGCGAGGAGCTGCGGCGAGAGGCCGAACACG
AGCAGCCTGCATGGCGCGCGCGCGGCAACGACGGAGCGGAGCAGCGCGAACTCCTTGGCG
TTCAGGCCGTCCGTGTCCGCGGTGCCGTTGCCGGAGCCGCCGCCGACGTCCCATGCCGAG
CGGCCGGAGCGCGCGGGCGAGGTTGGGGAGGAGGAGTGGGTGAGGAGCACCAGCTTGATG
ATGGAGAGCGTGGAGAAGACGATGAGGGTGGTGGTCAGCAGCTGCTTCGGCGACATCATC
GTCTTGTTTCCTGATGCTGCTGCTGAATTTCTTCTCGATCTGATCTTCCTCCTTCAAGTA
GATCTCATCTGCATCTGCTGTTCTGAATTCTTCTTCTTTTTCTGAGAAATGTTTGCCCCC
GGATCTGAATCTGGTGTGTGGCTTTGGTCCAACCTCCGTTGATCTCAGCTGATGCGCCGA
TCGCTGTCCTCAGTGGCTGGTAGGGATTGACTTTAGTTCGCGCTGGCTGTTTGCTTTCCT
GATGACTCTGTGTCGCTTTCTGCGAGGTGGTTGAGCTGCTGTCGAGTTCTTCAGTAAATA
CCATAACATACTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_25972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None