barSeed - Barley Seed Development Database

Probe CUST_13066_PI390587928

Source Contig U35_10015

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13066_PI390587928	Hv_44K_v2	AATTTTGATGAGAATTGAGGAGAGATGCGGGGGTTGGATAAATTGGTTGGTTGTTTTTAC	763	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.552	1.721	1.211	0.768	0.360	0.382
Raw	9014.327	15356.793	9640.040	9300.697	1581.980	1811.027

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365269	4089	2e-24	3983 - 4042	100	60 / 60	plus	ABC21329
MLOC	MLOC_36594.3	3538	2e-24	3424 - 3483	100	60 / 60	plus	ABC21329
MLOC	MLOC_36594.7	3644	2e-24	3500 - 3559	100	60 / 60	plus	ABC21329
JLOC1	JLOC1_23583.1	3496	8e-25	3342 - 3401	100	60 / 60	plus
Harvest21	ABC21329	823	3e-25	1 - 60	100	60 / 60	minus	ABC21329
Harvest35	U35_10015	823	3e-25	764 - 823	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_10015 823 Hv_44K_v2
GCACTTTTGCGTGTCATGGGAGGTGACGTGGCTGAACTGCCACTGGTTGCTACAAGTATG
GATCTTCAAGGACTGGGCTACTTCCAAGTGTTGTTCTCTTGCATCGAAAGGCTGCTAGTT
TCGCTGAAGGTGAAACACTTCATGCTTCCGGCCGCCCATGAAGCTGAAGCCATCTGGATG
AAGAAGTTTGGCTTCTCTAAAATCCCTCAGGATCAGATGGAAGCTTATCTTAACGGGGGA
CACCTCACCGTATTCCATGGAACCTTGAACCTATACAAGGCCATTCCATTGCCTGAATCT
TAGCATGGACGTCGAAGCCGCCCTTTTGCTTAATGGATATGCTCATCAGACATGTTTGTC
ATTTGAGGCTCTGCTGGTAACTGTACATAATAAGATGATGAAGCATGGCGAAAAGATGGT
AACAATTACTGCAAAATCTAAAAGGGGAGCATACAAGATACCAGAAACAACCGGAAATGT
TTGATGAAGATAGATGTGGAGATGCTGGAACAGGGGAAAGCGGTGATTCTCTGCCGGCTT
TTGTTTTCGTTTTGTACTTTTACTAGTGCGTTCAGCTGAGCCGCCATGCCGAGAAGCAAG
CGTTGTTGCTGTTTTCGATGATGTACATGCCTGGCGTCTCAGGAACTGCAGAATTTTGAT
GCGATGTTGTCTGTTGGGTTGCGGAGGTTTTGAAATTTTGATCTGTTCATTGGTGGGGTG
GCGCGTTTGTAAGGAAATGTTGGTTCTGTCGGTCTGGGTGTTGAATTTTGATGAGAATTG
AGGAGAGATGCGGGGGTTGGATAAATTGGTTGGTTGTTTTTAC

Homology of Contig U35_10015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g52407.1	1173	3e-51
Arabidopsis v10	None