barSeed - Barley Seed Development Database

Probe CUST_13063_PI390587928

Source Contig U35_49937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13063_PI390587928	Hv_44K_v2	AGCAAGTAGGAGTTGAAATGTTTGGAAAATCTTACTTCTGGGATGCACTACAGCAATATC	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14248.2	3090	2e-24	2176 - 2235	100	60 / 60	plus	None
MLOC	MLOC_14249.4	5151	2e-24	1582 - 1641	100	60 / 60	plus	None
MLOC	MLOC_14249.3	5017	2e-24	1582 - 1641	100	60 / 60	plus	None
MLOC	MLOC_14248.4	3245	2e-24	1912 - 1971	100	60 / 60	plus	None
MLOC	MLOC_14248.3	2827	2e-24	2213 - 2272	100	60 / 60	plus	None
MLOC	MLOC_14248.1	3854	2e-24	2521 - 2580	100	60 / 60	plus	None
JLOC1	JLOC1_9722.1	2070	8e-25	1968 - 2027	100	60 / 60	plus
Harvest21	ABC51910	601	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_49937	601	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_49937 601 Hv_44K_v2
ACTCCCTCCTCAGAGGTTCAAGGTACTAGTACTACTAGTAAAAAAGGGCTGCTTGAAAGG
ATTCAGATACTATGGGCTGGTCCCAAGACCATTAAGCCCCAGGTCCATCCATCCCATGAT
ACTACTTTTCCTAAAGGCTCCAGTGATGTAACAAGCCAGGAAGGGCATGATACTGCGCAA
CATAACAGACATTTGAAAAGGGCCATGAAGAATTGTTCCACAACTGACAATCCTGATGCG
AATGGTCCTGATAACAGTTCAGCAGATAGCACTAGTTTGTCAAATGACCCGTCTAATAAC
TGTTCTGAAACAGATGTCAAGGAAAATTTTGCAAATACAACGAATCACTGTAGCAAAACA
ATCGAAATCAGCAAAGCTGAAAAGATACGAGGTTCTGGAGAAAGCAACAAAGGAATGTTC
AGCTGGGCTGCAAGGTGGTGGTCATCTGGAAAATCAGATAAACAAGATAATCAAAATCAT
GTTGGAACAAGGAAAGACTTAGATAAAGGATGTGCATTTGTTAACAGTGCAAGTGGACAG
CAAGTAGGAGTTGAAATGTTTGGAAAATCTTACTTCTGGGATGCACTACAGCAATATCTT
T

Homology of Contig U35_49937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g24700.1	797	3e-59
Arabidopsis v10	None