barSeed - Barley Seed Development Database

Probe CUST_13062_PI390587928

Source Contig U35_10017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13062_PI390587928	Hv_44K_v2	GCTCGCATCGTGTACTAGTAGCTAGCTAGTACAAAACCAATAATAATTAATCTCATTTCA	846	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.062	0.245	1.948	3.199	1.177	0.875
Raw	112.872	657.528	4716.947	11555.110	1595.490	1277.781

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80000.2	2783	2e-24	2691 - 2750	100	60 / 60	plus	ABC18926
JLOC1	JLOC1_53272.1	2262	8e-25	2171 - 2230	100	60 / 60	plus
Harvest21	ABC18926	922	3e-25	847 - 906	100	60 / 60	plus	ABC18926
Harvest35	U35_10017	922	3e-25	847 - 906	100	60 / 60	plus

Contig Sequence (922 bp)

>U35_10017 922 Hv_44K_v2
GAGCAGCACCGCTGGTCGTGCGGGCCGGCCAACCTGATGCGCAAGATGTTCTGGGAGATT
GTCGCCAGCCGGCAGGTGTCGGCGTGGAAGAAGCTCCACGTGCTCTACGGCTTCTTCTTC
GTCAGGAAGGTGGTGGCGCACCTCGTGACATTCCTCTTCTACTGCGTCGTCATCCCGGCC
TACGTGCTCGTCGGCGGCCAGGGCCAGGTGCGCCTCCCAAAGTACGTGGCCATGTACGTG
CCCGCCATCATCACCCTGCTCAACGCCGTGTGCACCCCGAGGTCATGGCACCTGCTCGTC
TTCTGGATCCTCTTCGAGAACGTCATGTCCATGCACCGCTCCAAGGCCACCGTCATCGGG
CTCGTCGAGGCCAGCCGCGCAAACGAGTGGGTCGTCACAGAGAAGCTCGGTGGGTCTGCC
GCTGCTTCTGCTACCACCACGACCATGGCCACCAACGTTAACAAGCAGGCGCAGGCGGCC
ATGAAGAAGAAGAAGAAGAGCCAGAGCAACAGCAGCGGTTTCCTTGTCCCGGAGATGGTG
ATGGGGCTCTGCCTGCTCTACTGCGCCGTCTACGACATCGTCTTCGGCCATGACCACTTC
TATGTCTACCTCCTCATGCAGTCCGCCGCCGCATTCGTCATCGGATTCGGCTACGTCGGA
TCCCAATGAATCTGAATTTTGCCTTCTGCAGTCAGCATGCATGTTGTTGTACCAATAATA
TACATACATACATACATACCTAGTTGTATCGCGTTACTAAATAATTTCCAGATAGAGATG
GAGCAGGACAATTGCTTGCCTGCTTCGTCAATTATATATACTGTATTATATTCATTCATC
CATTTTGCTCGCATCGTGTACTAGTAGCTAGCTAGTACAAAACCAATAATAATTAATCTC
ATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09930.1	522	3e-72	protein\|CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
Brachypodium v1_2	Bradi4g38970.1	530	4e-108
Arabidopsis v10	AT5G03760.1	533	2e-69	\| Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 \| Nucleotide-diphospho-sugar transferases superfamily protein \| chr5:985910-990087 REVERSE LENGTH=533