- Probe CUST_13051_PI390587928
- Source Contig U35_25989
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_13051_PI390587928 | Hv_44K_v2 | CAAAAGAAAATTGTGGTTGGCTTGCTGTTGGTTCCAGTGCATAAACCATTTATTTGAAAA | 369 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.874 | 3.219 | 1.332 | 0.687 | 0.315 | 0.449 |
Raw | 873.809 | 1526.901 | 545.584 | 450.023 | 72.787 | 111.332 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC34627 | 393 | 6e-22 | 14 - 74 | 97 | 59 / 61 | minus | ABC34627 |
Harvest35 | U35_25989 | 442 | 3e-25 | 370 - 429 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_25989 442 Hv_44K_v2 CGGCAAAGTCAGTGGAGTCATTTGTGGAGAGGCAACGAAAAGCTGGGTGTGAGGTGAGGT CGTGCGACTTCGTGTCGTCCCCTCACGTTGACCACTACCGCAGCAATCCGGGGCTTTACA CCTCTCAGCTAACCAACTTCTTGGAGGACTGTGTGCTGGCCCGCCGTGATGATTCTTCGT CGTCGTCACCATCTGCATAGGGTGTTTCTGCAGGAATACCAACATATTTTTTCCTGGTGA TCCATTGAAATGTACCAGGATTATACAACGATTAATTATACATCTGACCCAATTTAGTCG TTCGTTTTTGTTGGTTTGCTTGTGGGTTTATGTTAGGAGGCACAACTGTAAAAAACGTGA GAAGAAAAGCAAAAGAAAATTGTGGTTGGCTTGCTGTTGGTTCCAGTGCATAAACCATTT ATTTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25989 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |