barSeed - Barley Seed Development Database

Probe CUST_1303_PI390587928

Source Contig U35_16650

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1303_PI390587928	Hv_44K_v2	TCGCATGTGTCAAATCCTGTGCAATGAAATATTCAGTTCTGGTGGTTATCAAGCAAAAAA	2459	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.478	0.656	0.669	1.473	3.089	4.191
Raw	2.818	9.115	9.074	30.565	23.866	36.391

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54619.1	1434	5e-22	1314 - 1368	100	55 / 55	plus
Harvest21	ABC05481	1074	3e-25	1004 - 1063	100	60 / 60	plus	ABC05481
Harvest35	U35_16650	2532	3e-25	2460 - 2519	100	60 / 60	plus

Contig Sequence (2532 bp)

>U35_16650 2532 Hv_44K_v2
GGCCACTGACCACGTCCAGTCCAAGCTCCACGCACCAGCTTTCTGAGAACACAGTCGGTC
GACTCAGCCTGCCACTGACAATGGCGTCGCAGCAGCAGAGCCGGAAGGACGCCGCCTCGA
AACGGGAGGAAGGCCAAGGCGGCGTCGGCCTAGAGGAGATCGGCAAGTTCCGCGCGGAGG
CGCAGCAGCACTCGGCGGACGCCATCCGTGCCGCCCAGGAGCGGTACAACCAGAACCTGC
AGCACGGCGGCGGCGCCAGGGGGGCGGTGACCGTCACCCAGGCGCCCGGCGCCACGGTGG
TCTCCTACCAGGAGCACAAGGCCATTCCCGAGGGCGCCCACCAGGGCCGCGCGCACGGCC
ACGGCGCCAACGCGCCGGCAGGGGGCACCACGGCGTCGTCTCGGGGCACCGAGTTGCAGC
ACGGCGCGAAGCAGGAGGAGGGCCGTGGGCATGGCACGGGCCACAAGGAGCACAAGGGCT
CGGCAGCGGTAACGCGCGCGGCCGACGACAAAGAGAGTGCCGCGCGCGGCACAAACGCGC
CGGCAGGGGGCACGGTGGCATCCTCTCGGGGCGTCGAGAAGCAGCACCACACGAAGCAGG
AGGAGGGCCGTGGGCATGGCGCGGGCCACAAGGAGCAGAAGGGCTCGGCGGCGGTGACCC
ACGCCACCGAGGACAGGGGCAAAGATGGCGACTCCGCGCGCAGCGCCAAGGACGCGGCCA
TGCACGCGCTCGGATTGACGGGAGACCAAACTGTGGGCAAGGGCGCCGGAATCAAGGACG
CCGGTGCGCATGGCGCGCATGTCCGTGGGCATGATGCGGGCCACAGGGAGCAGAAGCGCT
CGGACTCGGCCACGCGCACGCTCGGCTCCACTGGAGACTACGCTGCGGCCAAGGGTGCCG
AGACCAAGGACGCCGGTGCGCATGGCGCGCAGGTCACCGCGGAAGGGACACAGGAGGCCA
CAGCTACCGCCGCCGAGTACGCCAAACAGGTCGCAGCAAAGGCGAAGGAGGTCACGGTGA
GCACCGGCGGGACGGCCGCGGAGTACGCCAAGGCGGCCGCCGAGAAGGCGAGGGAGGCGG
CTCTGGCGGCCGGCAAGACGACGGCCGAGTACACGCAGCAGGCTGCGGTGAAGGGCAAGG
ACGTGACTGTCTCCACCGGCGGGACGGCCGCGGAGTACGCCAAGACGGCTGCAGAGAAGG
CCAAGGACGCCGCGCTGGCGGCCGGCAAGACGACGGCCGAGTACACGCAGCAGGCGGCGG
TGAAAACCAAAGACGTGACGCTGTCGACCGGTGCGCAGGCGGCGCAGAAGGCCAAGGAGG
TGACCGCCGTAACGGCGCATAAGGTGGCGGAGTACACCAAGGAGATGGCGGAGCAAGGGA
AGGCCACTGCCGCCGAGGTCGAGGAGAAGGCGAAGGAGGCAGCAGCCCGCGCCGCCGACA
AGGCCGAGGAGCCGAGCTTGGACACGAGCTCGCAGGCCAAGGGTTCGGCCGCACGGGCAG
CTGACAAGACCCGCGACACGGCGGCGCAGACCATGGGCAGGGCCAGGGACGCAACCGGAC
AGACGGGGGACATGACCGGAAGCATGGCTGGCCAGGTGAAGGACACGACCGGAGCCATGG
CGCAGAAGGCGAGTGACACGGCGGCGTACATCAAGGACTCGGTGAAGGGCGCAGCAGGAG
GCACGGCGGACAGGACCCGCGACACCACCGGACAAACCATGGGCAGGGCCAAGGACGCTA
CCGGAGACGTGGGGGACAGGACCGGAAGCATGGCCGCCCAGGTGAAGGACGCGACGGGAG
CCATGGCGCAGAAGGCCAGCGACACGGCCGCGTACATCAAGGACTCGGTGACGGGCGCGG
CGGGAGGCGCCGTGGACAAGACCCGGGACGCCGCGTCGCAGGTCGCGCAGAAGACCGGGG
AGGTGAAGAACAGGGCGGTGGACGCCGGCAAAAATGCCACCGCCAGCGGCACGACCGGGA
CGGCGAAGGCGAAGGGTGGAGGCACCGATGGCGCTAGGATCGTGGAAGACGCTCTGGAGG
TGGTGGGCGCGACCGTGGAGGCGGTGGGCGCGACGGTGTACGGGATAGCGCAGCACACGA
AGGGGATCGTCGCCGGCGAAGAGGAGCTCATCCCGGTGGAGCGGGAGGCGGCGAAGACCG
CCGGAGCCGGTGAGCGCAGGGAGAAATCCCAGTGAGCAGATCGACGCGTCACGGCGAAAA
TGTTTACGAGCCTATGGGAGCTTGGTTATGCGGTCACTTTGATCAGACACGTTATTAAGA
CTTACGTTAAGTGTGTGTTGTATATATATGGTTGTAATAATAACTAGTGCACTATATGGA
GTGAGTGAGTGCTCAGGTGAGTCGAATAATGGTTGTTTATAGGTAAGTGGGACTATGTCC
TGATGTTCAAGGCTTGAAGCTGCCAGTAGTACGTTTGGAAGTGGTCAGCTAGCTAGTAGT
CGCATGTGTCAAATCCTGTGCAATGAAATATTCAGTTCTGGTGGTTATCAAGCAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_16650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None