barSeed - Barley Seed Development Database

Probe CUST_13036_PI390587928

Source Contig U35_10024

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13036_PI390587928	Hv_44K_v2	TACCAAGTTCAATGCTTTAGCAGCAAACATGCACGATTTACCTGGTGAATTACCAGCCCC	1037	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361285	4697	2e-24	3742 - 3801	100	60 / 60	plus	ABC01971 ABC19696
MLOC	MLOC_40430.1	819	7e-23	113 - 172	98	59 / 60	minus	None
MLOC	MLOC_40430.2	1092	7e-23	113 - 172	98	59 / 60	minus	None
Harvest21	ABC19213	1113	3e-25	1038 - 1097	100	60 / 60	plus
Harvest35	U35_10024	1113	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1113 bp)

>U35_10024 1113 Hv_44K_v2
GACAACGAAGGGCATAACAACAGCACACCAGAAAAACATGGGATGCTTAGCTTAGAAGAT
TCACGGGGAAAGTTTTATGATCAATATATGCAGAAGAGGGATGCAAAACTAAAGGAGGAT
TGGAAGCTGCAGAAAGAAGAAAAGGAAGCAATATTAAAGGCAATGCATGAAAGTCTAGAA
AGGAGCAAGGCTGAGATGCAGGCCAAATTCTCTCGATCTGCTTTGCAATCAGTTTCACGA
AATAAGGATCAGGGGACAGATTCTTTCCTGGTAGAAGACGAAATAAACAGTGACTACCTA
TCTGGTGATTGTTCTTCCAGGAGTGCTGATTCCAGGAAGCATTTTTCAAACAAAGTAGCT
TACACACAAAAGAAATCCATTGCTCCCATCCATAGCCATAAGCATTCGTCAAGAACTGTA
AGATCCAGTTATGCAAATCGCAGGAACCCACCAGAAAATCCTCTTGCACAGTCAGTTCCC
AATTTCTCCGACTTCAGAAAGGAAAATACAAAGCCATCAGCTGGTCATAGCAGAGCTACT
GCAAGGGCTCAGCCAAAAAGTTTTTCCCGTAGTAAAAGCATAATTGAAGAGTCAAAGAGT
ATTTTGAATCAAGACCAATCAAGGGGATCACAGTCGATGAGGAAAAACTTAAATGCTACT
GAATTAAGGGACACTTCATCAGTGAACTACAACTGGGCTCCCTCAGGAATTTCTAGTAAC
ACCCATAAATCTGGCGTGCCGAAGTCTTTTGTTAGGAAAGGCAATGGGGCTCACCCTGTT
GTCGGTATAACCGGATTTCGACAACCAATGTTTGCAAGTGTCTTACAGGATGATGATGAT
GATTTTCCAGATCAACAAGAGGATTCCCCTGATGAAGCCAAAGATGAAGAATATGAAAGC
ATTGAAGAGAATCTTATGGAAAGTGATTTTCCTGCTGATTCAGACAGTGAGACTCCAAAA
CTAAGTCAGGATTTTGGAAATTCAGATGATCCAGGATCAGAAATGGGTGATGTTTCTTTT
CCAACGGAAGCATCCAATACCAAGTTCAATGCTTTAGCAGCAAACATGCACGATTTACCT
GGTGAATTACCAGCCCCCTGGAGCTCGCGAAAT

Homology of Contig U35_10024 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42410.1	1366	5e-146	protein\|expressed protein
Brachypodium v1_2	Bradi1g20840.1	1364	2e-166
Arabidopsis v10	None