barSeed - Barley Seed Development Database

Probe CUST_13034_PI390587928

Source Contig U35_10026

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13034_PI390587928	Hv_44K_v2	GACGAGGGGAAGAACCACGCCCAGGAGACCGATCAGCAGCAGGCCGACGAGCGAACCCAC	224	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367837	1792	2e-24	1000 - 1059	100	60 / 60	plus	ABC16487
MLOC	MLOC_37760.1	1012	2e-24	794 - 853	100	60 / 60	minus	ABC16487
JLOC1	JLOC1_24486.1	970	8e-25	757 - 816	100	60 / 60	minus
Harvest21	ABC19148	320	3e-25	225 - 284	100	60 / 60	plus
Harvest35	U35_10026	320	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (320 bp)

>U35_10026 320 Hv_44K_v2
GCGCCAACGGGGTGGCCGCGCCCGCCATGCCGCCCCGCGCGTTCCCGCCGCCGCTGCCGT
CCCTGGCGCGCCGCACTGTGGGGTCGCTGCAGATGAGGCAGCACCGCCGCGACGGCCGCC
TGGTCGTCGAGGCCGTCCCCGTGCTGTCCAACACCCTGTTCCGCGCGCAGCGCCGTGGCG
GGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCCCCCGCCGAGGACGAGGGGAAGAACC
ACGCCCAGGAGACCGATCAGCAGCAGGCCGACGAGCGAACCCACGAGGAGGAGGAGGATG
AGGAGGAGGGGGAGGAGGTC

Homology of Contig U35_10026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None