barSeed - Barley Seed Development Database

Probe CUST_13027_PI390587928

Source Contig U35_22000

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13027_PI390587928	Hv_44K_v2	TGCCTGTTTAGTCCTCTTGAGTAACGTATGGAGTTATGTTGTTTACTTGATTGATATTCA	619	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.659	1.918	1.146	0.750	0.230	0.295
Raw	2154.517	3935.990	2025.373	2139.391	225.477	313.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68051.1	1262	2e-24	78 - 137	100	60 / 60	minus	None
JLOC1	JLOC1_44986.1	1321	8e-25	1116 - 1175	100	60 / 60	plus
Harvest21	ABC20871	684	1e-23	620 - 680	98	60 / 61	plus
Harvest35	U35_22000	769	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_22000 769 Hv_44K_v2
GCCAAGAGCACAGGGAGGGTGTATAAGGTGGACACCGGGAAGCTCCCAGATCTGGAATAC
CTCTCGCTGCGCGGTGTCCAGTGGAGCTGGGCCGCCGTCTGCTCGGTGTTGCAGTGCGCG
AGCGAGGTGAAGCACCTTGTGATGAAGATTGAATTCTGTGGTGATTTTGAAGTGCTCCAG
CCGTTCCCAGAGATCGATTTGGTCGATTTCTTCAACGGCCACCCCAAGCTCATCAAGTTT
GAGATCCATGGTGCCATGTTTGCCGCTCTTTGCCAGAAAAACAGCCTGAAAAACTTGGAT
TCAAGATTCTGTATTCCTTGCCTGGAAGAGCTTTTGATCACCGTGCGCTCGCCTCTCAAT
GCTGAACAGAAGCTGTGCACTCTTGAATCGCTTGTGAAGTACAGCGTCAAGCTGCAGTCA
ATGGTCATCCGAATCTCACAGATGAAGAATTGCCATGATGCCGCTGACGATTTCTTTGAG
GAGATATGTAAGTTCAAGTACATCAACTACAGGAAAGTGCGGATTGAATAAAAGGAGACC
CTGTGTCAGTCAATTTGATTGAGGACTTCATTTTTTTACCATATATTCCCTGATTTTGAT
TGTTGTCGTCACCGGAGGATGCCTGTTTAGTCCTCTTGAGTAACGTATGGAGTTATGTTG
TTTACTTGATTGATATTCATCTAGTCAAGTTTGACTAGAACTTCTTTTTGAAACAATTTT
GATTGAATAAGGGAGGACTTCATTTTTCCCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g28120.1	429	2e-107	protein\|OsFBX330 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi4g32010.1	419	4e-105
Arabidopsis v10	AT1G10780.1	418	5e-73	F-box/RNI-like superfamily protein \| chr1:3592875-3594310 REVERSE LENGTH=418