barSeed - Barley Seed Development Database

Probe CUST_13022_PI390587928

Source Contig U35_25995

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13022_PI390587928	Hv_44K_v2	TTGCAACCGAGTTCTTAATTGATGGAAGTACACTGAACCTTGCAGGTTCCGACTCTGATA	721	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4350.1	3074	7e-23	2105 - 2164	98	59 / 60	plus	ABC23074
MLOC	MLOC_4350.2	3286	7e-23	2315 - 2374	98	59 / 60	plus	ABC23074
JLOC1	JLOC1_2691.1	3068	4e-23	2106 - 2165	98	59 / 60	plus
Harvest21	ABC25550	781	3e-25	722 - 781	100	60 / 60	plus
Harvest35	U35_25995	781	3e-25	722 - 781	100	60 / 60	plus

Contig Sequence (781 bp)

>U35_25995 781 Hv_44K_v2
TTGCATGGTACGCCTCATCAGGTTACATATTATGCCGAGCAGTCTCTGTATCCACTTATC
GTGTCTGTTCCTGTGGTTCGCCCCCTAAATCAAGTTCTGTCAATTATGGCTGATCAAGAT
TTGATTCATCACATGGATAATGATGCTACAAGCGCTGATGACCTGCAAAAAACGTATACT
GTTGAGGAATTTGAAGTTCGTGTATTAGAGTTGGAGAAACCTAGTGGACGTTGGGAGACA
AGGTCCACTATTCCGATGCAATCATTTGAAAATGCTCTGACTGTGCGCATTGTTACATTG
CATAACACAACCACCAAGGAAAATGAAACCCTGATGGCCATTGGGACTGCTTATGTTCAA
GGGGAGGACGTAGCTGCCAGAGGCCGGGTGCTTCTGTTCTCTTTCACTAAAAGTGAAAGT
TCTCAAAATCTGGTAACAGAGGTCTACTCAAAAGAGAGTAAAGGTGCCGTATCAGCTGTT
GCATCACTTCAAGGTCATCTGCTGATAGCTGCTGGTCCAAAGATCACATTGAGCAAATGG
ACTGGTTCTGAATTGACTGCTGTTGCATTCTATGATGCTCCTTTGCATGTTGTGAGCTTG
AACATTGTCAAAAATTTCGTTTTGTTTGGTGATATCCATAAAAGCGTATATTTTCTTAGC
TGGAAGGAGCAAGGTTCTCAATTGACTCTCCTTGCAAAAGATTTTGGATCTCTAGATTGC
TTTGCAACCGAGTTCTTAATTGATGGAAGTACACTGAACCTTGCAGGTTCCGACTCTGAT
A

Homology of Contig U35_25995 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi5g04673.1	1443	4e-153
Arabidopsis v10	AT5G51660.1	1442	2e-111	\| Symbols: CPSF160, ATCPSF160 \| cleavage and polyadenylation specificity factor 160 \| chr5:20980250-20989268 FORWARD LENGTH=1442