barSeed - Barley Seed Development Database

Probe CUST_13008_PI390587928

Source Contig U35_37976

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13008_PI390587928	Hv_44K_v2	TAAAAGAGCCACCGTATTTACTGTCCACGGAAGAGTAAAGTCTGATTTAAACCCTAAAAA	12	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.234	0.215	0.697	1.442	1.429	2.536
Raw	4.218	6.113	22.336	73.571	24.633	47.992

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_37976	437	3e-25	13 - 72	100	60 / 60	minus

Contig Sequence (437 bp)

>U35_37976 437 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGGGTTTAAATCAGACTTTACTCTTCCGTGGACAGTAAATACG
GTGGCTCTTTTACTGGTGACGCCGCGCTGACGCCACCGCAGCGGAAGGCAGCTGCCGCGC
GGCAAAATTGACAATTTTGACCTCTTTGCTGAATGAGTTCACAGACTGAACCTAAATAAA
TAAAAAATCACCGAGCTGACCCTTTTATGTGGCGCCCGACACTTAGACGTCACACTACAC
CATGTGATGCCTAGATCGTCGGCGCCACACAAAAGGACCACGCTGACGCTGCAGGGTTCA
CCCCAGCTGTGTGACGCCTAAGCCTCGGGCGTTGCACATGCTGTTGTGACTTAGGCGTGA
CACATGCAAGGGAGCGGACAGACTGCGGATCTGCTCGCGTCTTGTTTGCATGTGAGCCTA
CCCCGCCTGTTGCTGAA

Homology of Contig U35_37976 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None