barSeed - Barley Seed Development Database

Probe CUST_13005_PI390587928

Source Contig U35_10030

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13005_PI390587928	Hv_44K_v2	CACCACCTACTTGAAGTACTCATGATATCTAAAATTGTGGAGACTGTTTTGATTATCGAC	844	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366659	909	2e-24	818 - 877	100	60 / 60	plus	ABC19272 ABC24971
MLOC	MLOC_52440.1	349	2e-24	174 - 233	100	60 / 60	plus	ABC19272 ABC24971
JLOC1	JLOC1_33605.1	356	8e-25	179 - 238	100	60 / 60	plus
Harvest21	ABC19272	954	3e-25	845 - 904	100	60 / 60	plus	ABC19272
Harvest35	U35_19419	986	3e-25	343 - 402	100	60 / 60	minus
Harvest35	U35_10030	954	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (954 bp)

>U35_10030 954 Hv_44K_v2
TCAACTCGTCAGCAGCAAGCAACCAACCGCTCTTTTTAGCCCCCGCTCGCTCCACCCTCT
CCTCCCCCTCCCTCCCCCACTCCGGCCGTCCAGAAAGCGGAGTGCCGCCGTCGACGATCG
CCGTCCGTCCATGGTGAGGTCCAACTCCATCGACAGCTGCTACTCCTCCATCCAGGACGT
CACCTACAGTTGCGGCTACTGCGGCTACGCGCTGAACCTGAGCTCGGCGGCGCGGAACAC
GGCGGGCATCGGCTCCAAGTACGGCAAGCAGATCAGGAAGAAGGGCGTCGTCGCCTTCGT
CGCCGTCGACGAGACACGCTTCACGCAGGCCGACGAGGTCACCTGCGCGCCCCGCCTCCG
CCCCTGGACCTGGCGCCTCTTCCGGCGGAGGTCGCGCCTGCTCTGCGGCAAGTGCGGCGG
CCGCATCGGCGCCGCCTACGAGGTCGATGAGGACGAGGAGGACCCCGCCGGACTGTCCGC
GTGCGCCGGCTCGGACGACGACGACCCGCGGACGAGCCCGGGCGACGGCGGCGGCGCCAC
CAGAAGGAGGAGCTACCTCATCAGGATCGGCGCGCTGCAGCCCTGCACGGATGACTCTCC
TGCTGCTGACGACCCCTTCTCTCTATGACAGGCTGCGGCCCTCTATTCCACGACACGGTT
TGCTGAATTTTGTTTCTTTGTTCATAGCAAGTGCTACAGGATAGACAGGGTTTGATGTGT
GTAAGTTGATCCTATAGTTTTTGTGTCCTGGTAATGGAGTGAGCCATGGTTGCAGTTTTG
GGCCACCTTGTGTCTGTCAATGGCTTAATTATAGCTTTCTGTGTGGGTTTTTCTTTTCCA
TCAGCACCACCTACTTGAAGTACTCATGATATCTAAAATTGTGGAGACTGTTTTGATTAT
CGACAGATAAATACAAGTATATTCAGTTTGTCATCACTAAAAAAAAAAAAAAAA

Homology of Contig U35_10030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61680.1	158	1e-58	protein\|expressed protein
Brachypodium v1_2	Bradi2g54140.1	163	5e-69
Arabidopsis v10	None