barSeed - Barley Seed Development Database

Probe CUST_12_PI415269222

Source Contig TA34806_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12_PI415269222	Hv_44K_v2	AAGAACCTCATGTTCATGGGCGACGGAATGGGCAAGACGGTGATCAAGGCCAGCCTCAAC	160	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54267.1	2297	2e-24	1066 - 1125	100	60 / 60	minus	ABC13318
JLOC1	JLOC1_34923.1	2257	8e-25	1069 - 1128	100	60 / 60	plus
Harvest21	ABC13318	1212	3e-25	95 - 154	100	60 / 60	plus	ABC13318
Harvest35	U35_1977	1332	3e-25	152 - 211	100	60 / 60	plus

Contig Sequence (674 bp)

>TA34806_4513 674 Hv_44K_v2
CACGCGTCCGCATCAACGAGGATACACTGCCCTACGGTGCGGCCATGCAAGCATCGTTGG
CTGCTCGCTTCTGCTTGAGCACCAGCTCGTTACCGCTGCTAAGGTGATCTACATCAAGGC
CGGGGCGTACATGGAGAACGTGGAGGTGGGGAAGAACCACAAGAACCTCATGTTCATGGG
CGACGGAATGGGCAAGACGGTGATCAAGGCCAGCCTCAACGTCGTCGACGGCTCCACCAC
CTTCCGCTCCGCCACAGTCGCTGTGGTGGGCAACAACTTTCTAGCCCGCGACCTGACCAT
CGAGAACGCGGCCGGCCCGTCCAAGCACCAGGCGGTGGCGCTCCGCGTCGGCGCCGACCT
CTCGGCCTTCTACCGGTGCAGCTTCGTGGGCTACCAGGACACCCTCTACGTGCACTCCCT
CCGTCAGTTCTTCCGCGAGTGCGACATCTACGGCACCATCGACTTCGTCTTCGGCAACTC
CGCCGCCGTGCTCCAGAGCTGCAACCTCTACGCCCGCCGGCCCCTCCCCAACCAGAGCAA
CATCTACACGGCGCAGGGCCGGACGGACCCCAACCAGAACACCGGCATCTCCATCCAAAA
GTGCAAGGTGGCGGCGGCCTCCGACCTCGCCGCCGTGCAGTCCAGCTTCAAGACCTACCT
TGGCCGGCCGTGGA

Homology of Contig TA34806_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21034.1	427	4e-123	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	Bradi2g11860.1	562	9e-118
Arabidopsis v10	AT3G14310.1	592	1e-88	\| Symbols: ATPME3, PME3 \| pectin methylesterase 3 \| chr3:4772214-4775095 REVERSE LENGTH=592