barSeed - Barley Seed Development Database

Probe CUST_12998_PI390587928

Source Contig U35_10036

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12998_PI390587928	Hv_44K_v2	AGTTCGGCACTTGGGAGGAGACGGAGACAGACCAAGGCACTTGCATTGTAGCTTGTGTGC	6	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19148.2	2283	2e-24	372 - 431	100	60 / 60	plus	ABC46407
MLOC	MLOC_19148.1	2199	2e-24	493 - 552	100	60 / 60	plus	ABC46407
JLOC1	JLOC1_13281.1	2300	8e-25	372 - 431	100	60 / 60	plus
Harvest35	U35_10036	487	3e-25	7 - 66	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_10036 487 Hv_44K_v2
ATGCAGAGTTCGGCACTTGGGAGGAGACGGAGACAGACCAAGGCACTTGCATTGTAGCTT
GTGTGCCGGGAGAGGTCGGGTTGGGAGCGATGGCGGGCGCGGGCGCGACCACGATGACGG
CGTCGCCGTTCCCGACGGTGGAGAAGTGCGCGTCGGTGGGCCGGAGCGGGGACACGGTGG
TGGCCGACCTGGACGGCACGCTGCTGTGCGGGCGGAGCTCGTTCCCCTACTTCGCGCACA
TGGCGTTCGAGACCGGCGGCGTGCTCCGGCTGACGGCGCTGCTCCTGCTGGCGCCGCTCG
CGGGGCTGCTCTACTACGTCGTGTCCGAGTCGGCGGGGATCCAGGTGCTCATCTTCGCGT
CCATGGCCGGCGCCAAGGTGGACGACGTCGAGGCCGTGGCGCGCGCCGTGCTGCCCCAGT
TCTACTGCTCCGACCTCCACCCGGAGTCGTGGCGCGTCTTCTCGGCCTGCGGCCGCCGGT
GCGTGCT

Homology of Contig U35_10036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g09480.1	511	1e-57
Arabidopsis v10	None