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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12996_PI390587928Hv_44K_v2GAATATATGGGGTGCATTAGGAAAGTAAATGGAAGTCCGCATCATGGTTTTTGTATTAGT756GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1741.9631.1890.6770.2220.230
Raw 2669.8273793.3132012.1931833.200210.120235.071



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC188678193e-254 - 6310060 / 60minusABC18867
Harvest35U35_100378193e-25757 - 81610060 / 60plus



Contig Sequence (819 bp)

>U35_10037 819 Hv_44K_v2
GGTTAAGTCTGGTACATTGGAGTGGTTGCCAGAAGGTAGCCAATTAACCATGGCATCTCC
TGCGCAATCTGGGGACAATCAGAGGACCTACACATCCTTTGGTCAAAGCCAACAGAATAC
CTCTGAAAGGCCCCTTGGTGTGAAGTATAAAGACATAACAATTGCCAGGCTTGGGCCAGG
ACAGGCTATTGAGCTTGAGGCACATGCTGTTAAGGGAGTGGGGAAAGTTCATGCGAAGTG
GTCTCCAGTTGCTACAGCCTGGTACAGGATGCTCCCTGAGGTTGTTCTTCTCAAAGAAAT
TAAAGATGGTGATGCGGAGGAGCTAGTGAAAAAATGCCCAGTTAATGTTTTTGACATTGA
AGACCTGGGAAACGGGAAGAAGAGAGCAGTTGTTGCAAAGCCAAGAGCATGCACCCTTTG
CAGGGAATGTGTTAGACCGACTGATGATCAAGTAGAGCTACGGCGTGTTAGAGACCACTT
CATCTTTACAATCGAGTCCACCGGAGCTCTACCCCCAGAGGTGCTCTTCACAGAGGCCGT
GAAGATCCTTGAGGAGAAGTGCGAGAGAGTGATTTCTGAACTTTCTTGAGCCCGATACAA
AGTTTTGAGTACTATTCTGATGTAGTTTTTCTATTGCTATGTTGTGTTGAGAACGAAAGC
TTATTCTTCCTACCGTCGCCCTTGTGTTGGTTCCCCTTGTCTCCTCCAGCCACCATGGTG
GGGTTTGATGAGTGGAACCTAGGATCTGGATTCGGTGAATATATGGGGTGCATTAGGAAA
GTAAATGGAAGTCCGCATCATGGTTTTTGTATTAGTTTG



Homology of Contig U35_10037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g18410.13807e-114protein|DNA-directed RNA polymerase subunit, putative, expressed
Brachypodium v1_2Bradi1g15810.13611e-118
Arabidopsis v10AT1G60620.13851e-83| Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385