barSeed - Barley Seed Development Database

Probe CUST_1298_PI390587928

Source Contig U35_16653

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1298_PI390587928	Hv_44K_v2	CATTCGCCTTATTGGTTGTGTGGTGCGGGTTTACATGAGTGCAAAGATATCCGGTTCAAA	951	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.482	1.492	1.052	0.903	0.435	0.461
Raw	15002.800	23691.293	14498.833	19471.867	3321.990	3838.113

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372099	995	3e-22	938 - 993	100	56 / 56	plus	ABC05978
JLOC1	JLOC1_9481.2	1060	1e-22	873 - 928	100	56 / 56	plus
JLOC1	JLOC1_9481.1	990	1e-22	803 - 858	100	56 / 56	plus
Harvest35	U35_16653	1025	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1025 bp)

>U35_16653 1025 Hv_44K_v2
GCCTGGCTCCAGCCCGACGGAAGCGAGCGCGACGCCGACGCCGACGCCGACGACGAACCA
GGACCGACGCGCGACCTAGGGCTCCGCGCATTCCCCCGCCCCGCTCCCCCCCGTCGGCGT
CGAGGTCTGCTGAATCCAGAGCAATGGAGCGGTCTTTTAAGTTGAATCCAGATGCCGCTC
CTTTCGTGCCTGCCTCCAAGTCTCCGTTCGCGGAGAGCTTGAAAGGAAAGAAGGACCCTG
AGAAGCAAGTAGATGAGACTGAAAAGAGTGAGACCGCTGACAAGTCTGCTGGGTATGAAC
TCCCAGAGTCCCTTTCTTTTGATGACTATGCTGAAAGCCTAGGAAAGATCAACATCTCTA
CCGAGTCATCATCAAAAGGAGAAGCTGCTGAGGCAAGTCACGCGGGTAGCCATCTCGCCG
TGGTGGAATCTCTCTCAGTGATGTTCCCAGATGTGTCAGCTGACTTCATTCTTGAAGCAC
TGAAGGCCAATGAATTCGATGCAGTACTCACCATTGATATGCTTTCCGATCTGTGCGAAG
CTGATGATAACGGTCACTCTGCTGAAGTATCAGGAAAGCCGCAGCATCATGACCCTTCGT
CCACATAGGCGGCATGAGAGCTCTCCAGCTACATCTGGTTCAAGCAAATCTTCTTCACCA
TCAAGACTGGATGTAGCGGAGTACAATTTCTTGATTCTGCGAAGAATTCACCCCGAAGTG
TTTCGATTACTAGTCCCAAAAACAACAAGTACTATGTGTTGGGGTTTTAAATTCCGGGTG
GGATAGCTGGTCTGTTTGTTGGAGTCTGCCTCATCGTGATGCGTGGTTGCAAGTTGTACA
GCTCTTTTGGCGTAGCCGTTTAGACTCCAGAATTCGAAAACCTTGTGCCGTGGGCTGCGC
TTGTTTCATGAACCTATGCATTGCTGAGTTCTCCCGTGTGAGGAGACAGATCATTCGCCT
TATTGGTTGTGTGGTGCGGGTTTACATGAGTGCAAAGATATCCGGTTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_16653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None