- Probe CUST_12979_PI390587928
- Source Contig U35_37986
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12979_PI390587928 | Hv_44K_v2 | TGCATGCATGGAAATTGCATGCGTGCATGCATGGGGGCTGGGCTGAGCCCTTGTGGCTCG | 147 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.306 | 0.693 | 0.826 | 1.444 | 3.022 | 4.695 |
| Raw | 14.405 | 48.426 | 53.132 | 141.498 | 103.005 | 178.944 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_37986 | 397 | 3e-25 | 148 - 207 | 100 | 60 / 60 | minus |
Contig Sequence (397 bp)
>U35_37986 397 Hv_44K_v2 CCCCCTCGAGCTTTTTTTGTTTTAGCTAGGAATATATATATATATATATATATATATATA TATATATATATTTTACTGTTTTGGTTTTTTTTTTCTTTTCTTTTTTGCTGCTGTTAGTTT GTTTTAAAAAAAATAGAACTGCGAGGCCGAGCCACAAGGGCTCAGCCCAGCCCCCATGCA TGCACGCATGCAATTTCCATGCATGCACTCCCTCCCCACGTGAGTCCTCCCTCCCCTTTC CTTATTTCTCTCCTTCCTTCTTTCTCTCCCTCCTTTTCCTTTTAATCCCCACGTTCACCT CTCCCTCTCTTTCCTATTTTCTCTCCCATGATCTCCTTCCCAAAGTTCTCCCTCTCCTTC CTTCTACTCCCCTCACCTAAGCCTATATACCCCCCCC
Homology of Contig U35_37986 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |