barSeed - Barley Seed Development Database

Probe CUST_12977_PI390587928

Source Contig U35_49960

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12977_PI390587928	Hv_44K_v2	GTGCTATGGTTTTGAATAAACCAGTTAGTGAGAAGGAGAGTAAGGCACCATCTGTCCCAG	337	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.579	1.201	1.255	0.703	0.399	0.354
Raw	1531.640	1727.003	1634.907	1317.008	285.217	281.538

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57581.3	4867	2e-24	3892 - 3951	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.2	4877	2e-24	3902 - 3961	100	60 / 60	minus	ABC06577
MLOC	MLOC_57581.1	5318	2e-24	4343 - 4402	100	60 / 60	minus	ABC06577 ABC48272
JLOC1	JLOC1_37343.2	6342	8e-25	1973 - 2032	100	60 / 60	plus
JLOC1	JLOC1_37343.1	6420	8e-25	2051 - 2110	100	60 / 60	plus
Harvest21	ABC51938	400	3e-25	338 - 397	100	60 / 60	plus
Harvest35	U35_49960	400	3e-25	338 - 397	100	60 / 60	plus

Contig Sequence (400 bp)

>U35_49960 400 Hv_44K_v2
CAATCCCGAGGAGCGAAATGCTTCAAAACCTGAAGATAGCAATCCCGAGGAGCGAAATGC
TTCAAAACCTGAGGATAGCCATCGTTGAGAACTTCCTGGTTTTTTACTTCCCCGAGGACA
CGCATATAAAGTTTGCTCAATTATTTAGCATTCATGGCTGTACTAATTTTGTAGTGGTAA
TATCAACAGCTTCTTATTTGAATGTTCATACGTGTAACATCTAGAAAAGTTAAAGATAAT
TTTAAATCTCCCTCACCAGGTAAATCGGATGCTTCTAAGTTCAGGGTCGCTGACCATGCG
GTACAACATCGACAAAAGGATAGTGAAGTTATTTCTGGTGCTATGGTTTTGAATAAACCA
GTTAGTGAGAAGGAGAGTAAGGCACCATCTGTCCCAGAGA

Homology of Contig U35_49960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None