barSeed - Barley Seed Development Database

Probe CUST_12975_PI390587928

Source Contig U35_10041

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12975_PI390587928	Hv_44K_v2	TGATTGTATTGCGGTTCCACACCGATTATGTGGTATATATCTAGTGGTATAAAGACAGTA	0	GeneList: darkslateblue MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.531	3.157	1.243	0.917	0.514	0.457
Raw	21.166	68.226	23.231	25.998	3.085	3.163

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4033.4	2157	6e-21	1895 - 1947	100	53 / 53	plus
JLOC1	JLOC1_4033.3	2728	6e-21	2466 - 2518	100	53 / 53	plus
JLOC1	JLOC1_4033.2	1848	6e-21	1586 - 1638	100	53 / 53	plus
JLOC1	JLOC1_4033.1	1936	6e-21	1674 - 1726	100	53 / 53	plus
Harvest35	U35_10041	714	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (714 bp)

>U35_10041 714 Hv_44K_v2
TACTGTCTTTATACCACTAGATATATACCACATAATCGGTGTGGAACCGCAATACAATCA
GTCTATGAGACTATGACTATAAATTAGCACTACAATATACAATACGGCTATCAATACAAT
GGTATACAGATTAAATGGTTATGAATTCTGGTAGAGTTTGGATCGTTGTTACTTAGACGA
CCCAGCTTTCGCGCTACGCGTCGACATATCCAGATCTCCTCCTTTCCAGCTCTAGCATCT
CAGCCTCATCCCTCATTCCTTCACTCAGCAGCTCCTCCCAGAAGTCATCAGTCAGCTCGG
CCTCACCGCAGCCCAGCGGCCGCTCCGGTTCAGTCCATTGTTTTCTTCACACATGTATTT
TTTTTAAAAAAAATTCTACTATCTCACTTCCATTTTCTCTAACTAACCAACATATGCAAT
AGACCAAAATTAAACTGAATTGTGAAGGTGATAGATATGTCGTTTACAAAATACAAATAC
AGCCGAAACATACATACATACGGCTCAGCAGAAACCAGCAACGCATCCGAAAACATCCAA
AGGGTAGTCTATAAATGCACGATGGCATCATCTTAGCCTCCACCAAATAAATAAATAAAT
AAATACTTGCACCATGTCTCTAGCCGCTCGTCGTGTTATGCACCGTGATCCGGCGTCCCA
GGTCCCGCACTACACGTGCCAGCTNCTGTCAACCACGTACGCAACTTTGGTTGG

Homology of Contig U35_10041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None