barSeed - Barley Seed Development Database

Probe CUST_12967_PI390587928

Source Contig U35_47214

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12967_PI390587928	Hv_44K_v2	CTGAAAAAGCTGAACGGGAGATTGTTTCCTATTCTTGTGAAAAGAACCTCATTGGACATT	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13390.4	3180	2e-24	2547 - 2606	100	60 / 60	plus	None
MLOC	MLOC_13390.1	4776	2e-24	2869 - 2928	100	60 / 60	plus	None
MLOC	MLOC_13390.3	4398	2e-24	2702 - 2761	100	60 / 60	plus	None
MLOC	MLOC_13390.2	4906	2e-24	2867 - 2926	100	60 / 60	plus	None
JLOC1	JLOC1_9064.2	4773	8e-25	2713 - 2772	100	60 / 60	plus
JLOC1	JLOC1_9064.1	4832	8e-25	2772 - 2831	100	60 / 60	plus
Harvest21	ABC48043	331	3e-25	272 - 331	100	60 / 60	plus
Harvest35	U35_47214	331	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (331 bp)

>U35_47214 331 Hv_44K_v2
GGTGGAACTTGAAACTAGAATAGTTCCATATTACGGAGATATAACCATGAAGTTGGGTCG
ATTTCTTTTTGTCATTAGTCATATAGCACTCAACCATTTGGTTTACATTGAGACTTCCGT
TAAGAAAATTACAAACAAAAACAGAAGAATGAAAAATCACAGTCCACCAATGAGGATAGT
CCGGTAGATGGCTCCAAGAAATCGGAGGCACAAGACATAAATGCTGAACTGGGACTTGGT
GTAACGAGAGATGTTGCAATCGAGTTCTTTGCTGAAAAAGCTGAACGGGAGATTGTTTCC
TATTCTTGTGAAAAGAACCTCATTGGACATT

Homology of Contig U35_47214 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None