barSeed - Barley Seed Development Database

Probe CUST_12963_PI390587928

Source Contig U35_47217

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12963_PI390587928	Hv_44K_v2	CCTGTATTTTAGCCGTTCTTCTTGAACGTAATTTCACCAAATTGTCGAATTTCTTGCCTG	21	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.118	2.105	1.069	0.734	0.269	0.217
Raw	286.296	312.095	133.445	150.269	18.343	16.749

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2696.1	366	2e-24	55 - 114	100	60 / 60	minus	ABC00669 ABC00672
Harvest35	U35_47217	611	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (611 bp)

>U35_47217 611 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAACAGGCAAGAAATTCGACAATTTGGTGAAATTACGTTCAA
GAAGAACGGCTAAAATACAGGCAAAAGCAGGCATTCAAGCACAGATGGATGAGAAGAGGA
AGCCGACATTTTCATTTCCATTGCTGATGACAACAAGATGGTACCATCAGATTGGGGGGC
AGAGCACATCCACCATGAGAAGAACAACTAAGGTTCAGTTCTGAAACACTAATAGCACGC
ACATTTCCCACGAACGAACGCAGCCTAATAAGGATGTAATTAACACACGACGACGACGAA
CAGAGGTTAGGACCTCTCGCCACGGATGCGGCGGGCGAGCTGAATGTCCTTTGGCATGAT
GGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAACAGCCCGACGAGGTA
GGCCTCGGCGGCCTCCTGCAGGGCGGAAACGGCGGAGGACTGGAAGCGGAGGTCGGTCTT
GAAGTCCTGNGCGATCTCCCGGACGAGGCGCTGGAAGGGGAGCTTGCGGATGAGCAGCTC
GGTGCTCTTCTGGTACTTGCGGATCTCCCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTG
GGGCTTCTTGA

Homology of Contig U35_47217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	4e-62	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	7e-63
Arabidopsis v10	AT5G65360.1	136	2e-62	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136