barSeed - Barley Seed Development Database

Probe CUST_12961_PI390587928

Source Contig U35_47218

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12961_PI390587928	Hv_44K_v2	CGTGGTTGATGTATCTTGCATTTTACTCTCTATCTAATTGTGCAGCGAAATTATTGCTAA	15	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16191.1	413	6e-24	284 - 342	100	59 / 59	plus	ABC00350
JLOC1	JLOC1_11134.1	340	1e-22	285 - 340	100	56 / 56	plus
Harvest35	U35_47218	611	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (611 bp)

>U35_47218 611 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCAATAATTTCGCTGCACAATTAGATAGAGAGTAAAATGCAA
GATACATCAACCACGTCCGTATTTCCGGCTCAGCTTGGCCTGTGATTCTGAACTTCAAAC
AGAATTCAGACTAAAGAACAAAACGCGACGGTTTCAGAGACGGAAGGAGCGGTAGCATCT
CGATTTTCACACGGCTTAGCATTGACACATCACAGGAAGTAACAACAAGAACAAGATTGC
AAGCTGCAATCCATTGCAACCAGACCCACCACCAACATCGATGCCACAGCAAACCAAAAC
ATTCACGATCTAATCTAGAACTCCTGGGACGCGGAGCCGATGTCGCCTTTGGCCTTGCCG
GCCTTCTTGGGGAGGAGCGTGGTGTGGATGCTGGGGAGCACCCCGCCGGCGGCGATGGTG
ACCGAGCCCAGCAGCCGGCTCAGCTCCTCGTCGTTGCGCACCGCCAGCTGGATGTGGCGC
GGCACGATCCGGTTCTTCTTGTTGTCCCGCGCCGCGTTGCCGGCGAGCTCCAGAGTCTCT
GCGGCGAGGTACTCGAGGACGGCGGCGAGGTAGACGGTGGCACCGGCACCGACGCGCTCC
GCGTACTTGCC

Homology of Contig U35_47218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None