barSeed - Barley Seed Development Database

Probe CUST_12953_PI390587928

Source Contig U35_23266

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12953_PI390587928	Hv_44K_v2	GTCTCATTACGAGGTTTTGCAAGGTTTTGTGCTTTTGTGTAGCAGCCTTTGTTTTGCAGT	1037	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251586.1	2300	9e-22	2199 - 2260	97	60 / 62	plus	ABC17970
MLOC	MLOC_61527.1	2133	9e-22	49 - 110	97	60 / 62	minus	ABC17970
JLOC1	JLOC1_40212.1	2126	5e-22	1894 - 1955	97	60 / 62	plus
Harvest21	ABC17970	1097	3e-25	1 - 60	100	60 / 60	minus	ABC17970
Harvest35	U35_23266	1097	3e-25	1038 - 1097	100	60 / 60	plus

Contig Sequence (1097 bp)

>U35_23266 1097 Hv_44K_v2
GTCCCCCGGGCTGAGGAATTCGGACGAGGATCAATGATAATCCTGGACCGAATCAAAAAA
CAGACAAAATTTCCCAAGACAAAACCTCAACAGAGGAGAACTTGAAGGATTCTTGTTCTA
CCAAAATAGAAGTGGATAAACCTGCTGAGGTAGAAACAGATGTCCCCCAAAACCAAGATG
CCAGCAAACCTGCATTCACCATGCCAAAACCTCAGTGGCTTGGCGACAAGAGAATCGTAG
AACCTGAAGAAAATTGTATAAAAGAAGGAAACACGAATGCTGAGGAGCCTGATGATTTTG
TGGACTACAAAGACCGGAAAACTATTCTTTCTAATTCAGCCAATGAAAAGGATATTGAAG
GGGCTGCTCCTGGGCTTATCTTACGGAAGAGAAAGTCTGCCGATCAGTCAGCTGGCGTTG
AAGCAGAATCGTCTTCGGTTGAATCCGAAGCATCAGCAGCTGATGCTGTGGCCCTTCTGC
TGAAGCACACACGCGGTTTACAACCTGCAGAAGACATTGAGAACGAGAATGAACCGCAGG
CTAGCAAGAGAAAAGGAAAAAAGTCAAAACAAAAACGTGTACTGGGTCCTGCAAGACCAG
ATTTTCTTGAAGCTGGTCCAGTTCATGAAACATGGGTGCCACCTCAAGGTCAAACTGGTG
ATGGGCGCACTTCATTGAATGATCGTTTGGGGTATTGACATTTTCTCATCCTAGACTCCA
CCAGTTCCATCACAAAGAGAAACACAGTAGTGATCACCTGTGCTGCTGTAGTTGGATCGT
GAACATGTGTTCAGAATCATCAGATGGTATCAAGCCTCTTGGGGTGGGTGCTTGCGGTAT
ACTGGGACGACACTGGAGCAGAGGCTGACTGACTTAGATTGGCAATGGTGGTTACTGGTC
ACTTGGTCAGAGCTTCAAAGGCACATAGATACAATCTTCTGGTTGAGCTTTCAGGACTTA
TGTTTGTCGTTATTAAGATTGTAGAAGAGAATGTATATCACCCTGTCAAGGTTTCAGAAA
TGGATGTATATCATCATGTCTCATTACGAGGTTTTGCAAGGTTTTGTGCTTTTGTGTAGC
AGCCTTTGTTTTGCAGT

Homology of Contig U35_23266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16430.1	765	5e-79	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g43620.1	737	7e-92
Arabidopsis v10	None