barSeed - Barley Seed Development Database

Probe CUST_12938_PI390587928

Source Contig U35_11293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12938_PI390587928	Hv_44K_v2	GTTATGAGATCATTCATAAGAACGGATTTGCCAGGCTTGCACATACGAATATTTGACGGC	542	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.492	1.626	1.138	0.812	0.291	0.319
Raw	463.464	808.099	488.138	553.208	67.283	82.447

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13931.1	1703	2e-24	88 - 147	100	60 / 60	minus	ABC36711
MLOC	MLOC_13931.2	2500	2e-24	88 - 147	100	60 / 60	minus	ABC36711
JLOC1	JLOC1_9477.1	2055	8e-25	1911 - 1970	100	60 / 60	plus
Harvest35	U35_11293	605	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_11293 605 Hv_44K_v2
GGAGCAGATTACAAGGAAGAGACGAGCCCGAGTGCCCCGAAGGTGAATTTCCCCAATTAC
AAGAGCAGCAGCGAGGAGGAGGATGCCGGCGACAACTGGATGCACGGTGGCAGAACCGGC
CAGACAAAGAAGAATACCGATGAGGACTGGGACAGTGACTGACAAAGTAAAAAAAGAAGA
GTCAAGCCTGCATCTTCCACGGTTACTGTTGCCGCATTTCCTCCAACGTGTTGCTGCAGG
AAAAGAGTCTGTTGAGCTTATTTTTTGTGGGAGCATCCGTCTCAATGCAGCAGACGGTGC
CGCTTGATTCGACCTGACATCATGCCAGGTTGGGTGCTCATGAATAATTGTTTGAATTGT
GTCTCCAAATATGTAGTTGGCGCATCCCCGAAGGCCGAAGCAGTCTCTGTCAGTTACCAG
CAGCCGGTCACACATGCCATGATAGCAGGAGGTTAAAGTGTTGAATCTATTGTCCTTGGC
CTAAAGTTTCTTTCGGCAGTTTGATAGGTTGAAGGGGTCTCACTACACATCTGAATCTCT
TTGTTATGAGATCATTCATAAGAACGGATTTGCCAGGCTTGCACATACGAATATTTGACG
GCCCA

Homology of Contig U35_11293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None