barSeed - Barley Seed Development Database

Probe CUST_12933_PI390587928

Source Contig U35_47224

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12933_PI390587928	Hv_44K_v2	AAATGGTTCTAGTTGCGAAGACTACTAAATCAGCAGCTGATGATGGCCAATCAACAGAGC	597	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.492	1.015	1.380	0.941	0.679	0.319
Raw	78.100	76.545	99.158	97.902	25.695	13.944

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59703.1	3292	2e-24	1094 - 1153	100	60 / 60	plus	None
JLOC1	JLOC1_38867.1	3221	8e-25	1088 - 1147	100	60 / 60	plus
Harvest21	ABC48058	660	3e-25	598 - 657	100	60 / 60	plus
Harvest35	U35_47224	660	3e-25	598 - 657	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_47224 660 Hv_44K_v2
GGGCGCTGCTCGCATTCACGCAGCAGAACGTGACGGGACCGTCGGGGAAGTTTCCACCCT
TCCCTTTCCAGACTTCACGTTTGGACGAAGAGGGGCATGGTGATCCTGGAAGCAAATGGG
ATGATTGGGCTTCGGGTCATTTAGCTGCTTTTGGTTCCCATGTTCATGGGAAATTCGCTC
TCTTGCCGTTCATTGTCTTTGCAGAACTACTCTTCACAAGCATACAGGGTCTCGACTCCT
CTGATTGTTGGAGTGTGCAATGGTGGTTGTGCAGAATATCCTTGTCCCAGCAAAATATTT
TAGATGAGCTATCGTCCTCTTTGTTTGATCGAGTACAAGTGTACAAGAATGAAATGTTGG
CCCACTTTGGTGAACTTGAAAAGGTCTCTAGCTACTGGGGTTCTTTGTTATGTGATGAAG
AAGGGTTTTCTTTTGTCTCAGCTGTTTTTCTGGAAGCTGGAATCGTGGAGTATAAATATG
GCCAAGTTGATGCTTCAAGGCTGCATCTGGATAGTGCTCAAGAGGCATGTGGGATTCATC
TCTCTCTCACAGGGATTCTTGGTTTTCGAACAATACACCAGGTGGACGCCAAGTCCCAAA
TGGTTCTAGTTGCGAAGACTACTAAATCAGCAGCTGATGATGGCCAATCAACAGAGCTAG

Homology of Contig U35_47224 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g27180.1	919	3e-77	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g28660.1	890	2e-117
Arabidopsis v10	None