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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12926_PI390587928Hv_44K_v2TGGTATGTACCTCCTTCGTTCTTAAATATACCTCTTTTTAGAGGCTCTAGTAAAGACTAG73GeneList: yellowgreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9642.6622.3281.0860.8940.796
Raw 7.04134.06624.83417.3713.1613.216



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_7889.17388e-25620 - 67910060 / 60plus
Harvest35U35_472287083e-2574 - 13310060 / 60minus



Contig Sequence (708 bp)

>U35_47228 708 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGGCAAAATGATTCAAAATCTACACTTTAAAGTACATCTATA
TACATTTGTATATCTAGTCTTTACTAGAGCCTCTAAAAAGAGGTATATTTAAGAACGAAG
GAGGTACATACCAACACGCGATTCGAGCGCACAGCACACACCACAAGTTTGAAGCAGGTA
CAAATAAATACAGCCTACACTAAACTAAACCCAGCAGTTTGAAACGTCAACACCTAATAT
ATTATCCGCCACAATATACCTACTTGATACAACATGGAGTCGATCAAATTCACAGCCCGT
CGAATCGCTGCTACCTTCGACGCCTTTTGGTAAGATTCCGAGCGACCGTCAATGGAACAA
GCACTTTGTCGCCCTCGGTCTCAAGAGCATAGAAACGGCACAGTGCACGGCCCGCCACAT
TCCACACGAAGTTGCATCTCCCAGCCTTCTTAAACCTCGCTGCTTTCTCATAGACGATCT
GGTAGATCGTGCAGACCTCGTCGAACACTTCATCAAGGTTCCTCTGGGTTTGCTCAAATT
CAGCGGCATCGTAGAGCATGTATTTGTACTTTTGGTAGAGTTCTTTGAACTTCAGGTCTG
TTTCTTCCTTGTCCTGATTGTCACTCAGGTGCCCACTCTCGTTCAAGTAATCCCGATNAC
GGCCTGTCCAGAGGTTCAGGTACTTGTATCCTGAAGATGCTGCTCTCT



Homology of Contig U35_47228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None